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Report for CCDS23666.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23666.1 Public Mus musculus 9 Ccr1 23 108 98 CCDS HistoryNCBI Gene:12768Re-query CCDS DB by CCDS ID:23666.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23666.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026911.5 ENSMUSP00000026911.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026911.5Link to Ensembl Protein Viewer:ENSMUSP00000026911.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000026911Re-query CCDS DB by Protein ID:ENSMUSP00000026911
Original member Current member NCBI NM_009912.4 NP_034042.3 Accepted alive Link to Nucleotide Sequence:NM_009912.4Link to Protein Sequence:NP_034042.3Re-query CCDS DB by Nucleotide ID:NM_009912Re-query CCDS DB by Protein ID:NP_034042Link to BLAST:NP_034042.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034042.3 355 P51675 355 100% 0 0

Chromosomal Locations for CCDS 23666.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 123963424 123964491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1068 nt):
ATGGAGATTTCAGATTTCACAGAAGCCTACCCCACAACTACAGAATTTGACTATGGGGACTCCACTCCAT
GCCAAAAGACTGCTGTAAGAGCCTTTGGGGCTGGACTCCTGCCCCCCCTGTATTCTCTAGTGTTCATCAT
TGGAGTGGTGGGCAATGTCCTAGTGATTCTGGTGCTCATGCAGCATAGGAGGCTTCAAAGCATGACCAGC
ATCTACCTGTTCAACCTGGCTGTCTCTGATCTGGTCTTCCTTTTCACTTTACCTTTCTGGATTGACTACA
AGTTGAAAGACGACTGGATTTTTGGTGATGCCATGTGCAAGCTTCTCTCTGGGTTTTATTACCTGGGTTT
ATACAGTGAGATCTTCTTTATCATCCTGTTGACGATTGACAGATACCTGGCCATTGTCCATGCTGTGTTT
GCCCTGAGGGCCCGAACTGTTACTTTTGGCATCATCACCAGTATTATCACCTGGGCCCTAGCCATCTTAG
CTTCCATGCCTGCCTTATACTTTTTTAAGGCCCAGTGGGAGTTCACTCACCGTACCTGTAGCCCTCATTT
CCCCTACAAGAGCCTGAAGCAGTGGAAGAGGTTTCAAGCTCTAAAGCTAAACCTTCTTGGACTAATTTTG
CCTCTGTTAGTCATGATAATCTGCTATGCAGGGATCATCAGAATTCTGCTCAGAAGACCCAGTGAGAAGA
AGGTCAAAGCCGTGCGTCTGATATTTGCTATTACTCTTCTATTCTTCCTCCTCTGGACCCCCTACAATCT
GAGTGTATTTGTTTCTGCTTTCCAAGATGTTCTATTCACCAATCAGTGTGAGCAGAGTAAGCAACTGGAC
CTGGCCATGCAGGTGACTGAGGTGATTGCCTACACCCACTGTTGTGTCAACCCAATCATTTATGTTTTTG
TGGGTGAACGGTTCTGGAAGTACCTTCGGCAGCTGTTTCAAAGGCATGTGGCTATACCACTGGCAAAATG
GCTGCCCTTCCTCTCTGTGGACCAACTAGAAAGGACCAGTTCTATATCTCCATCCACAGGAGAACATGAG
CTCTCTGCTGGCTTCTGA

Translation (355 aa):
MEISDFTEAYPTTTEFDYGDSTPCQKTAVRAFGAGLLPPLYSLVFIIGVVGNVLVILVLMQHRRLQSMTS
IYLFNLAVSDLVFLFTLPFWIDYKLKDDWIFGDAMCKLLSGFYYLGLYSEIFFIILLTIDRYLAIVHAVF
ALRARTVTFGIITSIITWALAILASMPALYFFKAQWEFTHRTCSPHFPYKSLKQWKRFQALKLNLLGLIL
PLLVMIICYAGIIRILLRRPSEKKVKAVRLIFAITLLFFLLWTPYNLSVFVSAFQDVLFTNQCEQSKQLD
LAMQVTEVIAYTHCCVNPIIYVFVGERFWKYLRQLFQRHVAIPLAKWLPFLSVDQLERTSSISPSTGEHE
LSAGF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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