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Report for CCDS23662.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23662.1 Public Mus musculus 9 Ccr9 23 108 98 CCDS HistoryNCBI Gene:12769Re-query CCDS DB by CCDS ID:23662.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23662.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000168910.1 ENSMUSP00000126758.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168910.1Link to Ensembl Protein Viewer:ENSMUSP00000126758.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168910Re-query CCDS DB by Protein ID:ENSMUSP00000126758
Original member Current member EBI ENSMUST00000166236.8 ENSMUSP00000127024.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166236.8Link to Ensembl Protein Viewer:ENSMUSP00000127024.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166236Re-query CCDS DB by Protein ID:ENSMUSP00000127024
Original member Current member EBI ENSMUST00000163559.7 ENSMUSP00000131782.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163559.7Link to Ensembl Protein Viewer:ENSMUSP00000131782.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163559Re-query CCDS DB by Protein ID:ENSMUSP00000131782
Original member Current member EBI ENSMUST00000180093.1 ENSMUSP00000137144.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000180093.1Link to Ensembl Protein Viewer:ENSMUSP00000137144.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000180093Re-query CCDS DB by Protein ID:ENSMUSP00000137144
Original member Current member NCBI NM_001166625.1 NP_001160097.1 Accepted alive Link to Nucleotide Sequence:NM_001166625.1Link to Protein Sequence:NP_001160097.1Re-query CCDS DB by Nucleotide ID:NM_001166625Re-query CCDS DB by Protein ID:NP_001160097Link to BLAST:NP_001160097.1
Original member Current member NCBI NM_009913.6 NP_034043.1 Accepted alive Link to Nucleotide Sequence:NM_009913.6Link to Protein Sequence:NP_034043.1Re-query CCDS DB by Nucleotide ID:NM_009913Re-query CCDS DB by Protein ID:NP_034043Link to BLAST:NP_034043.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001160097.1 369 Q9WUT7 369 100% 0 0
NP_034043.1 369 Q9WUT7 369 100% 0 0

Chromosomal Locations for CCDS 23662.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 123774576 123774596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123779276 123780364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1110 nt):
ATGATGCCCACAGAACTCACAAGCCTTATTCCTGGCATGTTTGATGACTTCAGCTATGACTCCACTGCTT
CCACAGATGACTACATGAATTTGAATTTCAGTAGCTTCTTCTGTAAGAAAAATAATGTCAGGCAGTTTGC
AAGCCATTTTCTTCCACCTCTGTACTGGCTTGTGTTCATTGTGGGCACCTTGGGCAACAGCCTGGTCATC
CTTGTCTACTGGTATTGCACAAGAGTGAAGACCATGACTGACATGTTCCTTTTGAATTTAGCCATTGCTG
ATCTGCTCTTTCTTGCCACTCTTCCCTTCTGGGCCATTGCTGCTGCTGGTCAATGGATGTTCCAGACCTT
CATGTGCAAGGTTGTGAACAGCATGTACAAGATGAACTTCTACAGCTGTGTGCTTCTCATCATGTGCATC
AGTGTGGACAGATACATTGCCATTGTACAGGCCATGAAGGCTCAGGTCTGGAGGCAGAAAAGGCTGCTAT
ACAGCAAGATGGTCTGCATTACCATCTGGGTGATGGCAGCTGTGCTCTGCACCCCAGAAATCCTGTACAG
TCAAGTCAGTGGGGAATCTGGTATTGCCACATGTACCATGGTCTACCCTAAGGATAAGAATGCCAAGCTA
AAGTCAGCTGTCTTGATCCTGAAGGTCACCTTGGGGTTTTTCCTCCCCTTTATGGTCATGGCCTTCTGCT
ATACCATCATCATTCATACCTTGGTACAGGCCAAGAAGTCATCCAAGCACAAGGCCCTCAAGGTGACCAT
CACTGTCCTCACTGTCTTCATTATGTCTCAGTTCCCCTACAACTCCATTCTTGTAGTGCAGGCTGTTGAC
GCTTATGCCATGTTCATCTCCAACTGCACTATTTCCACCAATATTGACATCTGCTTCCAGGTTACTCAGA
CTATTGCATTCTTCCACAGTTGTCTGAACCCAGTTCTCTATGTTTTTGTTGGCGAGAGATTCCGAAGGGA
TCTGGTGAAGACCCTGAAGAACCTGGGATGCATTAGCCAGGCCCAGTGGGTTTCATTCACAAGGAGAGAG
GGTAGCTTGAAGCTTTCTTCTATGCTACTGGAGACAACTTCGGGGGCTCTCTCCCTATGA

Translation (369 aa):
MMPTELTSLIPGMFDDFSYDSTASTDDYMNLNFSSFFCKKNNVRQFASHFLPPLYWLVFIVGTLGNSLVI
LVYWYCTRVKTMTDMFLLNLAIADLLFLATLPFWAIAAAGQWMFQTFMCKVVNSMYKMNFYSCVLLIMCI
SVDRYIAIVQAMKAQVWRQKRLLYSKMVCITIWVMAAVLCTPEILYSQVSGESGIATCTMVYPKDKNAKL
KSAVLILKVTLGFFLPFMVMAFCYTIIIHTLVQAKKSSKHKALKVTITVLTVFIMSQFPYNSILVVQAVD
AYAMFISNCTISTNIDICFQVTQTIAFFHSCLNPVLYVFVGERFRRDLVKTLKNLGCISQAQWVSFTRRE
GSLKLSSMLLETTSGALSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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