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Report for CCDS35780.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35780.1 Public Mus musculus 1 Copa 23 108 98 CCDS HistoryNCBI Gene:12847Re-query CCDS DB by CCDS ID:35780.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35780.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000135192.7 ENSMUSP00000118179.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000135192.7Link to Ensembl Protein Viewer:ENSMUSP00000118179.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000135192Re-query CCDS DB by Protein ID:ENSMUSP00000118179
Original member Current member NCBI NM_009938.4 NP_034068.3 Accepted alive Link to Nucleotide Sequence:NM_009938.4Link to Protein Sequence:NP_034068.3Re-query CCDS DB by Nucleotide ID:NM_009938Re-query CCDS DB by Protein ID:NP_034068Link to BLAST:NP_034068.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034068.3 1224 Q8CIE6 1224 100% 0 0

Chromosomal Locations for CCDS 35780.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 172082910 172082949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172087552 172087665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172089097 172089170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172090939 172091019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172091164 172091240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172092245 172092354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172097674 172097783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172099668 172099767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172101379 172101514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172102210 172102292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172104109 172104259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172105186 172105252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172106117 172106192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172108312 172108394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172109786 172109925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172110489 172110574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172110677 172110815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172111865 172112027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172112124 172112270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172113026 172113215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172113334 172113429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172114745 172114833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172115023 172115146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172116926 172117015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172117187 172117296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172118015 172118092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172118253 172118321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172118841 172118977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172119187 172119373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172119458 172119568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172119877 172120038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172121230 172121424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172121700 172121759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3675 nt):
ATGCTAACCAAATTCGAGACGAAGAGCGCGCGGGTCAAAGGCCTTAGTTTTCATCCTAAAAGACCCTGGA
TCCTGACCAGTTTACACAATGGGGTCATCCAGTTATGGGACTATCGGATGTGCACCCTAATTGACAAATT
TGATGAACATGATGGTCCAGTGCGTGGCATTGACTTCCATAAGCAGCAGCCACTGTTCGTCTCTGGAGGC
GATGATTATAAGATTAAGGTTTGGAATTACAAACTTCGGCGCTGCCTGTTCACATTGCTCGGGCACTTGG
ATTATATCCGTACAACGTTTTTCCATCATGAATATCCTTGGATTCTGAGCGCCTCAGATGATCAGACCAT
TCGGGTGTGGAACTGGCAGTCTAGAACCTGTGTCTGTGTGTTAACGGGGCACAACCATTATGTAATGTGT
GCTCAGTTCCACCCCTCTGAAGACCTGGTGGTATCAGCTAGCCTGGACCAGACTGTCCGCGTTTGGGATA
TTTCTGGTCTAAGGAAGAAAAACTTGTCTCCTGGTGCGGTGGAGTCGGATGTGAGAGGAATAACTGGCGT
TGATCTGTTTGGAACCACGGATGCCGTGGTGAAGCATGTGCTAGAGGGTCATGACCGTGGAGTCAACTGG
GCTGCCTTCCACCCGACTATGCCCCTTATTGTATCTGGGGCAGATGACCGGCAAGTGAAGATCTGGCGTA
TGAATGAATCAAAGGCATGGGAGGTTGACACCTGCCGGGGCCATTACAACAATGTGTCTTGTGCTGTTTT
TCACCCTCGCCAAGAGTTGATCCTCAGCAATTCTGAAGACAAGAGTATTCGAGTCTGGGATATGTCTAAG
CGGACTGGGGTTCAGACTTTCCGTAGGGATCATGATCGCTTCTGGGTCCTGGCTGCCCATCCCAACCTTA
ACCTCTTTGCAGCAGGCCATGATGGTGGGATGATTGTATTTAAGCTGGAACGTGAGCGTCCTGCCTATGC
TGTTCATGGTAACATGCTGCATTATGTAAAGGACCGATTCCTCCGTCAGCTGGATTTCAACAGCTCCAAA
GATGTAGCTGTGATGCAGTTGCGGAGCGGTTCTAAGTTTCCAGTATTCAACATGTCATACAATCCAGCAG
AAAACGCAGTGCTGCTCTGCACCAGAGCAAGCAATCTAGAGAACAGTACCTACGACCTATACACCATCCC
CAAAGACGCAGACTCCCAGAACCCTGACGCCCCTGAAGGGAAACGATCCTCAGGCCTGACAGCGGTTTGG
GTTGCTCGGAATCGGTTTGCTGTCCTAGATCGCATGCATTCACTTCTGATTAAAAACCTGAAAAATGAGA
TCACCAAGAAAATCCAGGTGCCAAACTGTGATGAAATCTTCTATGCTGGTACAGGCAACCTCCTGCTTCG
GGATGCAGATTCCATCACACTCTTTGACGTCCAGCAGAAGCGAACTCTGGCATCAGTGAAGATTTCCAAG
GTGAAATATGTTATCTGGTCGGCAGACATGTCTCATGTAGCGTTACTGGCCAAGCATGCCATTGTGATCT
GTAACCGCAAGCTGGATGCTCTGTGTAACATTCATGAGAACATTCGTGTCAAGAGTGGGGCCTGGGATGA
AAGTGGGGTGTTTATCTATACCACAAGCAACCACATCAAATATGCTGTCACCACTGGGGACCATGGGATT
ATCCGAACTCTGGATTTACCCATCTATGTCACCAGAGTGAAGGGCAATAATGTATACTGCCTAGACAGAG
AGTGTCGTCCTCGGGTGCTAACCATTGATCCCACTGAGTTCAAGTTCAAACTGGCCCTGATCAACAGAAA
GTATGATGAGGTACTCCACATGGTGAGGAACGCTAAGCTGGTAGGCCAGTCAATCATCGCTTATCTCCAG
AAGAAGGGCTATCCTGAAGTGGCGCTGCATTTTGTAAAGGATGAGAAAACTCGTTTCAGCCTGGCCCTGG
AGTGTGGAAACATTGAGATTGCTCTAGAGGCAGCCAAAGCCCTGGACGACAAGAACTGCTGGGAGAAGCT
AGGAGAAGTGGCCCTGCTACAGGGCAATCACCAAATTGTAGAGATGTGCTATCAGCGCACCAAAAACTTT
GACAAACTTTCCTTCCTGTACCTTATTACTGGCAACCTGGAGAAACTTCGAAAGATGATGAAGATCGCTG
AGATCCGAAAGGACATGAGTGGCCATTATCAGAATGCCCTATACCTAGGTGATGTGTCAGAGAGAGTACG
GATCCTGAAGAACTGTGGGCAGAAATCCCTAGCCTATCTCTCAGCTGCTACCCATGGCTTAGATGAAGAA
GCTGAGAGCCTGAAGGAAACCTTTGACCCTGAGAAGGAGACAATCCCAGACATTGATCCTAATGCCAAGC
TGCTCCAGCCACCTGCACCTATCATGCCATTGGATACAAACTGGCCCTTACTGACCGTGTCCAAAGGGTT
CTTTGAAGGCTCCATTGCAAGCAAGGGGAAGGGAGGAGCATTGGCTGCTGACATTGACATCGACACTGTA
GGCACTGAAGGCTGGGGAGAGGACGCAGAGCTGCAGCTGGATGAAGATGGGTTTGTGGAGGCTCCAGAAG
GTTTGGGAGAGGATGTTCTTGGAAAGGGACAAGAAGAAGGAGGTGGCTGGGATGTAGAAGAAGATTTGGA
GCTCCCACCTGAGCTGGATGTACCCTCTGGGGTGTCTGGTAGTGCTGAAGATGGGTTCTTTGTGCCCCCA
ACCAAGGGAACAAGCCCAACGCAAATCTGGTGCAATAACTCCCAGCTTCCAGTAGATCACATCTTGGCAG
GTTCTTTTGAAACAGCCATGCGGCTTCTCCATGATCAGGTGGGAGTAATCCAGTTTGGCCCCTATAAGCA
ACTGTTCCTACAGACATATGCCCGAGGCCGCACCACCTATCAAGCGCTGCCCTGCTTGCCCTCCATGTAT
AGTTACCCTAATCGCAATTGGAAGGATGCAGGGCTAAAGAATGGAGTACCAGCTGTAGGCCTAAAGCTTA
ATGACCTGATCCAACGTTTGCAACTGTGTTATCAGCTCACCACAGTTGGCAAGTTTGAGGAAGCTGTGGA
AAAATTCCGTTCCATCCTACTCAGTGTGCCTCTTCTTGTTGTGGACAATAAACAGGAGATTGCAGAGGCC
CAGCAGCTCATCACCATTTGCCGTGAATACATTGTGGGTTTGTGCATGGAGATAGAAAGGAAGAAGCTAC
CTAAGGAGACCCTAGACCAGCAGAAGCGCATCTGTGAGATGGCAGCCTACTTCACACACTCAAATCTGCA
GCCTGTGCATATGATCTTGGTGCTGCGGACAGCCCTCAACCTTTTCTTCAAGCTCAAGAACTTCAAGACA
GCTGCCACCTTTGCCCGACGCCTGCTGGAACTTGGGCCCAAGCCTGAAGTAGCTCAGCAGACAAGAAAAA
TCTTATCTGCCTGTGAGAAAAACCCCACAGATGCCTGCCAGCTCAATTATGACATGCACAACCCCTTTGA
CATTTGTGCTGCATCTTACCGGCCCATCTACCGTGGAAAACCAGTGGAGAAGTGTCCACTCAGTGGGGCC
TGCTATTCCCCTGAGTTCAAGGGGCAAATCTGCAGGGTCACTACAGTGACAGAGATTGGCAAAGATGTGA
TTGGGCTGAGGATCAGTCCTCTTCAGTTTCGCTAA

Translation (1224 aa):
MLTKFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQPLFVSGG
DDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVWNWQSRTCVCVLTGHNHYVMC
AQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVESDVRGITGVDLFGTTDAVVKHVLEGHDRGVNW
AAFHPTMPLIVSGADDRQVKIWRMNESKAWEVDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSK
RTGVQTFRRDHDRFWVLAAHPNLNLFAAGHDGGMIVFKLERERPAYAVHGNMLHYVKDRFLRQLDFNSSK
DVAVMQLRSGSKFPVFNMSYNPAENAVLLCTRASNLENSTYDLYTIPKDADSQNPDAPEGKRSSGLTAVW
VARNRFAVLDRMHSLLIKNLKNEITKKIQVPNCDEIFYAGTGNLLLRDADSITLFDVQQKRTLASVKISK
VKYVIWSADMSHVALLAKHAIVICNRKLDALCNIHENIRVKSGAWDESGVFIYTTSNHIKYAVTTGDHGI
IRTLDLPIYVTRVKGNNVYCLDRECRPRVLTIDPTEFKFKLALINRKYDEVLHMVRNAKLVGQSIIAYLQ
KKGYPEVALHFVKDEKTRFSLALECGNIEIALEAAKALDDKNCWEKLGEVALLQGNHQIVEMCYQRTKNF
DKLSFLYLITGNLEKLRKMMKIAEIRKDMSGHYQNALYLGDVSERVRILKNCGQKSLAYLSAATHGLDEE
AESLKETFDPEKETIPDIDPNAKLLQPPAPIMPLDTNWPLLTVSKGFFEGSIASKGKGGALAADIDIDTV
GTEGWGEDAELQLDEDGFVEAPEGLGEDVLGKGQEEGGGWDVEEDLELPPELDVPSGVSGSAEDGFFVPP
TKGTSPTQIWCNNSQLPVDHILAGSFETAMRLLHDQVGVIQFGPYKQLFLQTYARGRTTYQALPCLPSMY
SYPNRNWKDAGLKNGVPAVGLKLNDLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEA
QQLITICREYIVGLCMEIERKKLPKETLDQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFKT
AATFARRLLELGPKPEVAQQTRKILSACEKNPTDACQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGA
CYSPEFKGQICRVTTVTEIGKDVIGLRISPLQFR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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