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Report for CCDS37776.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37776.1 Public Mus musculus 18 Pcdha4 23 108 98 CCDS HistoryNCBI Gene:12936Re-query CCDS DB by CCDS ID:37776.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37776.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000192512.5 ENSMUSP00000141408.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000192512.5Link to Ensembl Protein Viewer:ENSMUSP00000141408.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000192512Re-query CCDS DB by Protein ID:ENSMUSP00000141408
Original member NCBI NM_007766.2 NP_031792.1 Updated not alive Link to Nucleotide Sequence:NM_007766.2Link to Protein Sequence:NP_031792.1Re-query CCDS DB by Nucleotide ID:NM_007766Re-query CCDS DB by Protein ID:NP_031792
Current member NCBI NM_007766.3 NP_031792.1 Accepted alive Link to Nucleotide Sequence:NM_007766.3Link to Protein Sequence:NP_031792.1Re-query CCDS DB by Nucleotide ID:NM_007766Re-query CCDS DB by Protein ID:NP_031792Link to BLAST:NP_031792.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031792.1 947 O88689-1 947 100% 0 0

Chromosomal Locations for CCDS 37776.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 36952766 36955150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37156155 37156213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37159265 37159353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37184946 37185256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2844 nt):
ATGGAATTTTCCTGGGGAAGTGGCCAGGAATCCCAGCGCTTGCTTCTTTCTTTTCTGCTTCTTGCAATCT
GGGAGGCAGGGAACAGCCAGATCCACTACTCCATCCCTGAGGAGGCCAAACACGGCACCTTCGTGGGCCG
CATCGCGCAGGACCTGGGGCTGGAGCTGACGGAGCTGGTGCCCCGCCTGTTCAGAGTGGCGTCCAAGGAC
CGCGGAGACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGGGAGG
AGCTGTGCGGGCGGAGCGCGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGTTGCAGGTTTT
CCACGTGGAGGTGGAGGTGAGGGACATTAACGACAACCCTCCCAGGTTCCCAACAACACAAAAGAATCTG
TTCATTGCAGAATCAAGGCCACTTGACACTTGGTTTCCACTAGAGGGCGCTTCAGACGCAGATATCGGAA
TCAATGCTGTACTGACTTACAGACTGAGTCCAAATGATTACTTTTCTTTGGAAAAACCATCCAACGACGA
ACGGGTAAAAGGTCTTGGACTTGTATTACGGAAATCTTTAGACCGGGAGGAAACTCCAGAGATAATTTTA
GTGCTTACTGTCACGGACGGAGGAAAGCCAGAGCTGACCGGCAGTGTTCAGTTACTCATCACTGTGCTGG
ATGCCAATGATAATGCTCCAGTTTTTGACAGATCTCTGTATACCGTGAAATTACCAGAAAACGTTCCAAA
TGGGACATTGGTAGTCAAAGTCAATGCCTCAGATTTAGACGAAGGGGTAAATGGGGATATTATGTACTCA
TTTTCTACAGATATTTCACCAAATGTGAAATACAAATTCCACATAGACCCTGTTAGCGGAGAGATTATTG
TAAAGGGATACATTGATTTTGAAGAATGCAAATCCTATGAAATTCTCATAGAGGGAATTGACAAGGGACA
ACTTCCACTCTCTGGGCACTGTAAAGTCATTGTACAAGTTGAAGACATCAACGATAATGTTCCAGAATTG
GAATTCAAATCTCTATCACTTCCAATACGAGAGAATTCTCCAGTGGGCACTGTCATCGCACTCATTAGTG
TGTCTGATCGGGACACGGGTGTCAACGGGCAGGTGACCTGCTCCCTGACAAGTCATGTCCCCTTCAAGTT
GGTGTCCACATTCAAGAATTACTATTCGCTCGTGCTGGACAGCGCCCTGGACAGAGAGACAACAGCGGAC
TATAAGGTGGTGGTGACAGCGCGGGATGGGGGCTCTCCCTCGCTGTGGGCCACGGCTAGCGTGTCTGTTG
AGGTTGCTGACGTGAACGACAATGCACCTGTGTTCGCGCAGCCCGAATACACGGTGTTCGTGAAGGAGAA
CAACCCGCCTGGTGCGCACATCTTCACGGTGTCAGCGATGGATGCGGACGCACAGGAGAACGCGCTGGTG
TCCTACTCGCTGGTGGAGCGGAGGGTGGGCGAGCGCTTGCTGTCGAGCTATGTGTCTGTGCACGCGGAGA
GCGGCAAGGTGTTCGCGCTGCAGCCTCTGGACCATGAGGAGCTGGAGCTGCTGCGGTTCCAGGTGAGCGC
GCGGGATGCTGGTGTACCTGCCCTGGGCAGCAATGTGACTCTGCAGGTGTTTGTGCTGGACGAGAATGAC
AACGCGCCCACACTGCTGGAACCTGAGGCAGGAGTCTCTGGTGGAATCGTGAGCCGGTTGGTGTCCAGAT
CAGTGGGTGCAGGCCATGTGGTGGCTAAGGTGCGCGCGGTGGATGCAGACTCTGGCTATAATGCATGGCT
CTCTTATGAGCTGCAATCGTCAGAAGGCAATTCCCGTAGCCTTTTCCGCGTAGGTTTGTATACGGGCGAG
ATTAGTACTACGCGCATACTGGATGAAGCAGATTCGCCACGTCAGCGCCTTCTGGTGCTGGTGAAGGACC
ATGGTGACCCAGCAATGATTGTTACCGCCACAGTGTTGGTGTCTCTGGTAGAGAATGGCCCGGTACCAAA
GGCTCCATCGCGAGTATCCACGAGTGTCACACACTCTGAGGCGTCACTGGTGGATGTCAACGTGTACCTG
ATCATTGCCATCTGTGCAGTGTCCAGCCTGCTAGTGCTCACGCTGCTGCTGTACACAGCGCTGCGCTGTT
CCACTGTCCCCAGTGAGAGCGTGTGCGGGCCTCCAAAACCGGTAATGGTGTGCTCCAGTGCAGTGGGGAG
CTGGTCATACTCCCAACAAAGGAGGCAAAGGGTGTGCTCTGGGGAGTACCCACCTAAGACCGACCTCATG
GCCTTCAGCCCCAGTTTATCTGATTCAAGGGACAGAGAGGATCAATTGCAGTCTGCAGAGGATTCCTCTG
GAAAGCCCCGGCAGCCCAACCCTGACTGGCGCTACTCTGCCTCGCTAAGAGCAGGCATGCACAGCTCTGT
GCACCTGGAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCAACAGTATCC
AGTGCAACACCAGAACCTGAGGCAGGAGAGGTGTCCCCTCCGGTGGGCGCCGGTGTCAACAGCAACAGCT
GGACCTTTAAATACGGACCAGGCAACCCCAAACAGTCCGGTCCCGGTGAGTTGCCAGACAAATTCATTAT
CCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTGCTAACAACCAAATTGACAAAAGCGATTTT
ATAACCTTCGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGACCCAGGAGA
AAAAAGAGAAAGGGAACAGCACGACGGACAACAGTGACCAGTGA

Translation (947 aa):
MEFSWGSGQESQRLLLSFLLLAIWEAGNSQIHYSIPEEAKHGTFVGRIAQDLGLELTELVPRLFRVASKD
RGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVEVEVRDINDNPPRFPTTQKNL
FIAESRPLDTWFPLEGASDADIGINAVLTYRLSPNDYFSLEKPSNDERVKGLGLVLRKSLDREETPEIIL
VLTVTDGGKPELTGSVQLLITVLDANDNAPVFDRSLYTVKLPENVPNGTLVVKVNASDLDEGVNGDIMYS
FSTDISPNVKYKFHIDPVSGEIIVKGYIDFEECKSYEILIEGIDKGQLPLSGHCKVIVQVEDINDNVPEL
EFKSLSLPIRENSPVGTVIALISVSDRDTGVNGQVTCSLTSHVPFKLVSTFKNYYSLVLDSALDRETTAD
YKVVVTARDGGSPSLWATASVSVEVADVNDNAPVFAQPEYTVFVKENNPPGAHIFTVSAMDADAQENALV
SYSLVERRVGERLLSSYVSVHAESGKVFALQPLDHEELELLRFQVSARDAGVPALGSNVTLQVFVLDEND
NAPTLLEPEAGVSGGIVSRLVSRSVGAGHVVAKVRAVDADSGYNAWLSYELQSSEGNSRSLFRVGLYTGE
ISTTRILDEADSPRQRLLVLVKDHGDPAMIVTATVLVSLVENGPVPKAPSRVSTSVTHSEASLVDVNVYL
IIAICAVSSLLVLTLLLYTALRCSTVPSESVCGPPKPVMVCSSAVGSWSYSQQRRQRVCSGEYPPKTDLM
AFSPSLSDSRDREDQLQSAEDSSGKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVS
SATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPANNQIDKSDF
ITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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