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Report for CCDS37779.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
37779.1 |
Public |
Mus musculus |
18 |
Pcdha11 |
23 |
108 |
98 |
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Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47
Review status: Provisional (this record has not been manually reviewed by the collaboration) Sequence IDs included in CCDS 37779.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
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EBI |
ENSMUST00000115657.9 |
ENSMUSP00000111321.3 |
Accepted |
alive |
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NCBI |
NM_009960.1 |
NP_034090.1 |
Accepted |
alive |
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Chromosomal Locations for CCDS 37779.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2853 nt): ATGTTAAGTTTTCAGAGAAGGGGATCCTGCACTCTGCCACCGCTGCGCTGGCTTCTTCTCCTCGCTGCCT GGGAGGCAGGGAGCGGCCAGCTCCACTACTCTATCCCAGAGGAGGCCAAACACGGCACCTTCGTGGGCCG CATCGCGCAGGACCTGGGGCTGGAGCTGACGGAGCTGGTGCCCCGCCTGTTCAGGGTGGCGTCCAAGGAC CGCGGGGACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGGGAGG AGCTGTGCGGGCGGAGCGCGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTT CCACGTGGAGGTGGAGGTGAGGGACATTAATGACAACCCGCCAGTGTTTCCTCTTAGAGAACAAAGGCTG CTTATTTCTGAATCCAAGCAACCAGACTCGCGTTTTCCGCTAGAGGGAGCGTCTGATGCGGACATAGGAG AGAACGCTGTATTGGTCTACAGATTAAGTCAAAACGAGTATTTTTCTTTAGAACCACCAATCAATAGTAA GCAAACTAAAAGACCGTCACTTATATTAAAGAAGGTTCTAGATCGGGAGAAAACCCCGGAACTTAATTTG CTATTAACAGCCACAGATGGGGGAAAACCGGAGCTCACGGGTACAGTTCAGCTTTGGGTTCGTGTCTTAG ATGTTAACGACAATGATCCAGTGTTCGATCATTTAGAATACAAGGTAAGAATAATGGAAAATGCTGCTAA AGAAACTCTTGTCATAACGTTGAACGCCACGGATCTAGACGAAGGTGCAAACGGGCAACTGGTATACTCT TTGATGTCCATTAAGCCCACTGGGAGGCATTTATTTACCCTAGATGAAAAAAATGGAGAATTGAGGGTCA ACGGGACTTTAGATTATGAAGAGAACAAATTGTATGAAATAGAAGTGCTGGCCACGGATAAAGGAACACC TCCAATGGTAGGTCACTGTGTAGTCTTGGTAGAAATCTTAGACACCAATGACAACTCCCCTGAAGTGACA TTAACTTCGCTGTCCCTCCCAGTAAGAGAGGATGCCCAGCCAAATACAGTCATTGCTTTAATTAGCGTAT CCGACCTTGATTCTGGAATCAATGGCCAAGTGACCTGCTCTCTTACACCCAATGTCCCCTTCAAGATTGT ATCCACCTTTAAAAATTATTATTCTCTGGTACTGGATAGCAGTCTGGACCGCGAGAGAGTGTCAACTTAT GATTTGGTTGTGATAGCGCGGGACGGGGGCTCGCCTTCACTGTCTGCCACTGTCAGCGTGTCCGTGGAAG TGGCTGACGTGAACGACAATGCTCCAGTGTTCGCGCAGCCTGAATACACGGTGTTCGTGAAGGAGAACAA CCCGCCTGGAGCGCACATCTTTACAGTGTCAGCGATGGATGCGGATGCGCAGGAGAACGCGCTGGTGTCC TACTCGCTGGTGGAGCGGAGGGTGGGCGAGCGCTTGCTGTCGAGCTATGTGTCTGTGCACGCGGAGAGCG GCAAGGTGTTCGCGCTGCAGCCTCTGGACCATGAGGAGCTGGAGCTGCTGCAGTTCCAGGTGAGCGCGCG GGATGCTGGTGTGCCTGCCCTGGGCAGCAATGTGACTCTGCAGGTGTTTGTGCTGGATGAGAATGACAAT GCGCCCACGCTGCTGCCTCATGGAGCTGTTGGAGCTGGTGGGGCAGTGAGCGAGCTTGTGTCTCGGTCGG TGGGATCGGGCCATGTAGTCACCAAGGTGCGGGCAGTGGATGCCGACTCTGGTTACAATGCTTGGCTGTC ATATGAAGTACAGTTGGGAACAGGTGGCGTACGCAGCCCCTTCCGCGTGGGTCTGTACACGGGTGAGATC AGCACGACGCGTGCCTTGGATGAGGTGGACTCTCCTCGGCAGACTCTATTGGTGCTGGTGAAGGACCATG GTGAGCCAGCACTGACAGCCACTGCAACTGTTTTAGTGTCTCTTGTGGAAAGCGGCCAAGCTCCAAAGTC CTTTTCACAGGCATCAGGTCGTGCTTCAGCCCCGGAGGCATCGCTGGTGGATGTCAACGTGTATTTGATT ATCGCCATCTGCGCAGTGTCCAGCCTGTTGGTACTCACGCTGCTGCTGTATACAGCGCTGCGCTGCTCAG CATTGCCTATGGTCAATGAGGCCACTGGGGGGCCTGGAAAGCCCATGCTGGTGTGCTCCAGCGAGGTGGG GAGCTGGTCCTACTCACAGCAGAGGCGGCAGAGGGTGTGCTCTGGGGAAGTTCTTCCCAAGACCGACCTC ATGGCATTTAGCCCCAGCCTACCTCCCAACCTGGGTAGAGATGAAAGGGAAAGACAGGAGTCAGAGTCAA GTCACCCTGGACAGCCCCGGCAGCCCAACCCTGACTGGCGCTACTCTGCCTCGCTAAGAGCAGGCATGCA CAGCTCTGTGCACCTGGAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCA ACAGTATCCAGTGCAACACCAGAACCTGAGGCAGGAGAGGTGTCCCCTCCGGTGGGCGCCGGTGTCAACA GCAACAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAGTCCGGTCCCGGTGAGTTGCCAGACAA ATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTGCTAACAACCAAATTGACAAA AGCGATTTTATAACCTTCGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGA CCCAGGAGAAAAAAGAGAAAGGGAACAGCACGACGGACAACAGTGACCAGTGA
Translation (950 aa): MLSFQRRGSCTLPPLRWLLLLAAWEAGSGQLHYSIPEEAKHGTFVGRIAQDLGLELTELVPRLFRVASKD RGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVEVEVRDINDNPPVFPLREQRL LISESKQPDSRFPLEGASDADIGENAVLVYRLSQNEYFSLEPPINSKQTKRPSLILKKVLDREKTPELNL LLTATDGGKPELTGTVQLWVRVLDVNDNDPVFDHLEYKVRIMENAAKETLVITLNATDLDEGANGQLVYS LMSIKPTGRHLFTLDEKNGELRVNGTLDYEENKLYEIEVLATDKGTPPMVGHCVVLVEILDTNDNSPEVT LTSLSLPVREDAQPNTVIALISVSDLDSGINGQVTCSLTPNVPFKIVSTFKNYYSLVLDSSLDRERVSTY DLVVIARDGGSPSLSATVSVSVEVADVNDNAPVFAQPEYTVFVKENNPPGAHIFTVSAMDADAQENALVS YSLVERRVGERLLSSYVSVHAESGKVFALQPLDHEELELLQFQVSARDAGVPALGSNVTLQVFVLDENDN APTLLPHGAVGAGGAVSELVSRSVGSGHVVTKVRAVDADSGYNAWLSYEVQLGTGGVRSPFRVGLYTGEI STTRALDEVDSPRQTLLVLVKDHGEPALTATATVLVSLVESGQAPKSFSQASGRASAPEASLVDVNVYLI IAICAVSSLLVLTLLLYTALRCSALPMVNEATGGPGKPMLVCSSEVGSWSYSQQRRQRVCSGEVLPKTDL MAFSPSLPPNLGRDERERQESESSHPGQPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPANNQIDK SDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
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