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Report for CCDS2043.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2043.1 Public Homo sapiens 2 LYG1 24 110 108 CCDS HistoryNCBI Gene:129530Re-query CCDS DB by CCDS ID:2043.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2043.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000308528.9 ENSP00000311320.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000308528.9Link to Ensembl Protein Viewer:ENSP00000311320.4Re-query CCDS DB by Nucleotide ID:ENST00000308528Re-query CCDS DB by Protein ID:ENSP00000311320
Original member Current member EBI ENST00000409448.1 ENSP00000386923.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409448.1Link to Ensembl Protein Viewer:ENSP00000386923.1Re-query CCDS DB by Nucleotide ID:ENST00000409448Re-query CCDS DB by Protein ID:ENSP00000386923
Original member Current member NCBI NM_001371380.1 NP_001358309.1 Accepted alive Link to Nucleotide Sequence:NM_001371380.1Link to Protein Sequence:NP_001358309.1Re-query CCDS DB by Nucleotide ID:NM_001371380Re-query CCDS DB by Protein ID:NP_001358309Link to BLAST:NP_001358309.1
Original member Current member NCBI NM_174898.3 NP_777558.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_174898.3Link to Protein Sequence:NP_777558.1Re-query CCDS DB by Nucleotide ID:NM_174898Re-query CCDS DB by Protein ID:NP_777558Link to BLAST:NP_777558.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001358309.1 194 Q8N1E2 194 100% 0 0
NP_777558.1 194 Q8N1E2 194 100% 0 0

Chromosomal Locations for CCDS 2043.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 99284393 99284511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99284688 99284820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99291237 99291421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99292536 99292640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99295628 99295670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (585 nt):
ATGTCTGCATTGTGGCTGCTGCTGGGCCTCCTTGCCCTGATGGACTTGTCTGAAAGCAGCAACTGGGGAT
GCTATGGAAACATCCAAAGCCTGGACACCCCTGGAGCATCTTGTGGGATTGGAAGACGTCACGGCCTGAA
CTACTGTGGAGTTCGTGCTTCTGAAAGGCTGGCTGAAATAGACATGCCATACCTCCTGAAATATCAACCC
ATGATGCAAACCATTGGCCAAAAGTACTGCATGGATCCTGCCGTGATCGCTGGTGTCTTGTCCAGGAAGT
CTCCCGGTGACAAAATTCTGGTCAACATGGGCGATAGGACTAGCATGGTGCAGGACCCTGGCTCTCAAGC
TCCCACATCCTGGATTAGTGAGTCTCAGGTTTCCCAGACAACTGAAGTTCTGACTACTAGAATCAAAGAA
ATCCAGAGGAGGTTTCCAACCTGGACCCCTGACCAGTACCTGAGAGGTGGACTCTGTGCCTACAGTGGGG
GTGCTGGCTATGTCCGAAGCAGCCAGGACCTGAGCTGTGACTTCTGCAATGATGTCCTTGCACGAGCCAA
GTACCTCAAGAGACATGGCTTCTAA

Translation (194 aa):
MSALWLLLGLLALMDLSESSNWGCYGNIQSLDTPGASCGIGRRHGLNYCGVRASERLAEIDMPYLLKYQP
MMQTIGQKYCMDPAVIAGVLSRKSPGDKILVNMGDRTSMVQDPGSQAPTSWISESQVSQTTEVLTTRIKE
IQRRFPTWTPDQYLRGGLCAYSGGAGYVRSSQDLSCDFCNDVLARAKYLKRHGF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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