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Report for CCDS24273.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24273.1 Public Mus musculus 10 Cs 23 108 98 CCDS HistoryNCBI Gene:12974Re-query CCDS DB by CCDS ID:24273.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24273.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005826.8 ENSMUSP00000005826.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005826.8Link to Ensembl Protein Viewer:ENSMUSP00000005826.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000005826Re-query CCDS DB by Protein ID:ENSMUSP00000005826
Original member Current member NCBI NM_026444.4 NP_080720.1 Accepted alive Link to Nucleotide Sequence:NM_026444.4Link to Protein Sequence:NP_080720.1Re-query CCDS DB by Nucleotide ID:NM_026444Re-query CCDS DB by Protein ID:NP_080720Link to BLAST:NP_080720.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080720.1 464 Q9CZU6 464 100% 0 0

Chromosomal Locations for CCDS 24273.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 128337918 128337959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128349753 128349803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128350433 128350540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128351199 128351264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128352674 128352805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128353023 128353211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128358334 128358533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128359170 128359299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128359434 128359535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128359944 128360153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128360968 128361132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1395 nt):
ATGGCTCTACTCACTGCAGCAACCCGGCTCTTGGGAGCCAAGAACTCATCCTGCCTCGTCCTTGCTGCCC
GGCATGCCAGTGCTTCTTCCACGAATTTGAAAGATGTACTGAGCAATCTGATACCTAAGGAGCAGGCCAG
AATTAAGACCTTCAAGCAGCAACATGGGAAGACAGTGGTGGGCCAGATCACTGTGGACATGATGTACGGT
GGCATGAGAGGCATGAAGGGACTTGTGTATGAGACTTCGGTTCTTGATCCTGACGAGGGCATCCGTTTCC
GAGGCTACAGTATCCCTGAGTGCCAGAAAATGCTGCCTAAGGCTAAGGGTGGAGAAGAACCCCTGCCTGA
GGGCTTATTTTGGCTGCTGGTAACTGGACAGATGCCCACAGAGGAACAGGTGTCTTGGCTCTCACGAGAA
TGGGCAAAAAGGGCAGCTCTGCCTTCTCATGTGGTCACCATGCTGGACAATTTTCCAACCAATCTGCACC
CTATGTCTCAGCTCAGTGCAGCCATCACAGCCCTCAACAGTGAAAGCAACTTCGCCCGGGCATATGCAGA
GGGAATGAACCGAGCTAAGTACTGGGAGCTCATCTATGAGGACTGCATGGACCTCATTGCCAAGCTGCCG
TGCGTTGCAGCCAAGATCTACCGGAATCTGTACCGGGAGGGCAGCAGTATCGGAGCCATTGACTCTAGGC
TAGACTGGTCACACAATTTTACCAACATGTTAGGCTACACCGACCCTCAGTTCACCGAGCTCATGCGTTT
GTACCTCACCATCCATAGTGACCATGAGGGTGGTAATGTAAGTGCCCACACAAGCCATTTGGTGGGCAGC
GCCCTTTCAGACCCTTACCTGTCCTTTGCAGCAGCCATGAATGGGCTGGCGGGGCCTCTACATGGACTAG
CAAATCAGGAGGTGCTTGTCTGGCTGACACAGCTACAGAAGGAAGTTGGCAAAGACGTGTCAGATGAGAA
GTTACGAGACTACATCTGGAACACACTCAATTCAGGACGGGTGGTCCCAGGATACGGTCATGCAGTACTG
AGGAAGACTGACCCTCGCTATTCCTGTCAGCGAGAGTTTGCTCTGAAACATCTGCCTAAGGATCCCATGT
TCAAGCTGGTGGCTCAGCTGTACAAGATTGTGCCCAATATCCTCTTAGAGCAAGGGAAGGCTAAGAACCC
TTGGCCCAACGTAGACGCTCACAGTGGGGTGCTGCTCCAGTACTATGGCATGACGGAGATGAACTACTAC
ACAGTCCTGTTTGGAGTGTCTCGGGCACTGGGTGTGCTAGCCCAGCTCATCTGGAGCAGAGCCCTAGGCT
TCCCCCTGGAAAGGCCCAAGTCCATGAGCACGGATGGCCTGATGAAGTTTGTGGACTCTAAGTAA

Translation (464 aa):
MALLTAATRLLGAKNSSCLVLAARHASASSTNLKDVLSNLIPKEQARIKTFKQQHGKTVVGQITVDMMYG
GMRGMKGLVYETSVLDPDEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLFWLLVTGQMPTEEQVSWLSRE
WAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGMNRAKYWELIYEDCMDLIAKLP
CVAAKIYRNLYREGSSIGAIDSRLDWSHNFTNMLGYTDPQFTELMRLYLTIHSDHEGGNVSAHTSHLVGS
ALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVL
RKTDPRYSCQREFALKHLPKDPMFKLVAQLYKIVPNILLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYY
TVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTDGLMKFVDSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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