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Report for CCDS28723.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28723.1 Public Mus musculus 17 H2-M10.4 23 108 98 CCDS HistoryNCBI Gene:224753Re-query CCDS DB by CCDS ID:28723.1Re-query CCDS DB by GeneID:224753See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28723.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057502.13 ENSMUSP00000058686.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057502.13Link to Ensembl Protein Viewer:ENSMUSP00000058686.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000057502Re-query CCDS DB by Protein ID:ENSMUSP00000058686
Original member Current member EBI ENSMUST00000169950.1 ENSMUSP00000130832.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169950.1Link to Ensembl Protein Viewer:ENSMUSP00000130832.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169950Re-query CCDS DB by Protein ID:ENSMUSP00000130832
Original member Current member NCBI NM_177634.2 NP_808302.1 Accepted alive Link to Nucleotide Sequence:NM_177634.2Link to Protein Sequence:NP_808302.1Re-query CCDS DB by Nucleotide ID:NM_177634Re-query CCDS DB by Protein ID:NP_808302Link to BLAST:NP_808302.1

Chromosomal Locations for CCDS 28723.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 36460164 36460264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36460390 36460665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36461236 36461511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36461746 36462015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36462257 36462329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (996 nt):
ATGAGGAACCCTGGACACTTTGCCATCCTTTGCCTCCTATTGGTGACCATAGACCGGCCCCAGTATTGTG
AAGGCTCACACTGGCTGAAGACTTTCAGGATTGTAATAATGGAGCCTGGCATATTGGAGCCCCGGTTCAT
CCAGGTCAGCTATGTAGACTCCATACAGTATCAGGGATTCGACAGCAGATCAGAGACTGCGGGGATGCAA
CCTCGGGCTGCTTGGATGAAGCAGGAGCCACCTGAATATTGGAAGAATGAGACAGAACATGCCATGGGCG
CGTCACTGTTAGCAAGACGAACTCTTATATACATGGTGACTGAAAATAATAACAAGAAGAATGACTATCA
CACCCTGCAGGAAGTGTTTGGCTGCAATGTGGCACATGATGGGAGCTTCCTTGGTGGTCACTACGGGCTC
ACCTACTATGGCTATGATTACATCATCCTGAATGAGGACCTGAACTCTTGGACTACAGAGGGAAAAGTAG
GTGGAAAATTTAATCCAGACCGGACGCAAGGAAGCGTGACAGAAGGTTGGAGGACTTACCTGAAAGGGGA
GTGCACAGAAAGGTTTCTTAGATGCCTGGACCTTGGAAAGGAGACCTTGCTGCGCTCCGATGCCCCCCGA
ACACATGTGACCCACAAAGTAACACCTGAAGGGAATGTCACCCTGAGGTGCTGGGCTCTGGGTTTCTACC
CAGCTGACATCACCCTGACCTGGAAGAGAGATGGGAAAAACCACACCCAGGACATGGAGCTGCCAGACAC
CAGGCCTGCAGGGGATGGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTTCCTTTTGGAGAAGAGCTGAGA
TACACATGTCATGTGCACCATGAAGGGTTACCTGGGCCACTCACTCTGAAATGGGGGCCTCCACAAACCA
TCCCCATCATAGCAATTCTCATCGGCCTGGTTCTTGTAGCTTTGGTGGTGGGAACTGTGGTGATTTTTCT
GGTGTGGAGGAAATAA

Translation (331 aa):
MRNPGHFAILCLLLVTIDRPQYCEGSHWLKTFRIVIMEPGILEPRFIQVSYVDSIQYQGFDSRSETAGMQ
PRAAWMKQEPPEYWKNETEHAMGASLLARRTLIYMVTENNNKKNDYHTLQEVFGCNVAHDGSFLGGHYGL
TYYGYDYIILNEDLNSWTTEGKVGGKFNPDRTQGSVTEGWRTYLKGECTERFLRCLDLGKETLLRSDAPR
THVTHKVTPEGNVTLRCWALGFYPADITLTWKRDGKNHTQDMELPDTRPAGDGTFQKWAAVVVPFGEELR
YTCHVHHEGLPGPLTLKWGPPQTIPIIAILIGLVLVALVVGTVVIFLVWRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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