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Report for CCDS22029.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22029.1 Public Mus musculus 7 Ctsd 23 108 98 CCDS HistoryNCBI Gene:13033Re-query CCDS DB by CCDS ID:22029.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22029.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000151120.8 ENSMUSP00000121203.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000151120.8Link to Ensembl Protein Viewer:ENSMUSP00000121203.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000151120Re-query CCDS DB by Protein ID:ENSMUSP00000121203
Original member Current member NCBI NM_009983.3 NP_034113.1 Accepted alive Link to Nucleotide Sequence:NM_009983.3Link to Protein Sequence:NP_034113.1Re-query CCDS DB by Nucleotide ID:NM_009983Re-query CCDS DB by Protein ID:NP_034113Link to BLAST:NP_034113.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034113.1 410 P18242 410 100% 0 0

Chromosomal Locations for CCDS 22029.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 142376571 142376738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142376833 142376931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142377026 142377170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142377333 142377455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142380766 142380992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142382592 142382710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142383418 142383541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142385459 142385618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142387737 142387804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1233 nt):
ATGAAGACTCCCGGCGTCTTGCTGCTCATTCTCGGCCTCCTGGCTTCGTCCTCCTTCGCGATTATCAGAA
TCCCTCTGCGCAAGTTCACATCTATCCGTCGGACTATGACGGAGGTGGGCGGCTCTGTGGAAGACCTGAT
CCTCAAAGGCCCCATCACCAAGTACTCCATGCAGTCATCGCCTAAGACCACGGAGCCAGTGTCAGAGTTA
CTCAAAAACTACCTGGATGCCCAGTACTATGGCGATATCGGCATCGGAACCCCGCCGCAGTGTTTCACAG
TCGTCTTTGATACTGGCTCCTCTAACCTGTGGGTCCCCTCCATTCATTGCAAGATACTTGACATAGCCTG
CTGGGTCCACCATAAGTACAACAGTGACAAGTCCAGCACCTATGTGAAGAACGGCACGTCCTTTGACATC
CACTACGGCTCAGGAAGCCTCTCTGGGTACCTGAGCCAGGACACTGTATCGGTTCCATGTAAGTCTGACC
AGTCAAAGGCAAGAGGTATCAAGGTGGAGAAACAGATCTTTGGAGAAGCCACCAAGCAGCCTGGAATCGT
ATTTGTTGCAGCCAAGTTTGATGGCATCTTGGGCATGGGCTACCCTCATATCTCTGTTAACAACGTGCTT
CCGGTCTTTGACAACCTGATGCAACAGAAGCTGGTGGACAAGAACATCTTCTCCTTCTACCTGAACAGGG
ACCCAGAAGGGCAACCCGGAGGAGAACTAATGCTTGGTGGCACTGACTCCAAGTACTACCACGGGGAGCT
GTCCTACCTGAACGTCACTCGAAAGGCCTACTGGCAGGTGCACATGGACCAGTTGGAGGTGGGCAATGAG
CTGACCCTGTGCAAGGGAGGCTGTGAGGCTATTGTGGACACAGGGACATCTCTTCTGGTGGGGCCTGTGG
AAGAGGTGAAGGAGCTGCAGAAGGCCATCGGGGCAGTGCCTCTTATCCAGGGTGAGTATATGATTCCTTG
TGAGAAGGTGTCCAGCCTGCCCACGGTCTACCTGAAGCTAGGAGGCAAAAACTATGAACTACACCCAGAC
AAGTATATACTCAAGGTATCGCAGGGTGGAAAGACAATCTGCCTGAGTGGCTTCATGGGAATGGACATAC
CCCCTCCCAGTGGGCCGCTCTGGATCCTGGGCGATGTCTTCATTGGTTCCTACTACACTGTGTTTGACAG
AGACAACAATAGGGTCGGCTTTGCCAATGCTGTCGTACTCTAA

Translation (410 aa):
MKTPGVLLLILGLLASSSFAIIRIPLRKFTSIRRTMTEVGGSVEDLILKGPITKYSMQSSPKTTEPVSEL
LKNYLDAQYYGDIGIGTPPQCFTVVFDTGSSNLWVPSIHCKILDIACWVHHKYNSDKSSTYVKNGTSFDI
HYGSGSLSGYLSQDTVSVPCKSDQSKARGIKVEKQIFGEATKQPGIVFVAAKFDGILGMGYPHISVNNVL
PVFDNLMQQKLVDKNIFSFYLNRDPEGQPGGELMLGGTDSKYYHGELSYLNVTRKAYWQVHMDQLEVGNE
LTLCKGGCEAIVDTGTSLLVGPVEEVKELQKAIGAVPLIQGEYMIPCEKVSSLPTVYLKLGGKNYELHPD
KYILKVSQGGKTICLSGFMGMDIPPPSGPLWILGDVFIGSYYTVFDRDNNRVGFANAVVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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