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Report for CCDS20131.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20131.1 Public Mus musculus 6 Cycs 23 108 98 CCDS HistoryNCBI Gene:13063Re-query CCDS DB by CCDS ID:20131.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20131.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000161401.1 ENSMUSP00000124523.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161401.1Link to Ensembl Protein Viewer:ENSMUSP00000124523.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161401Re-query CCDS DB by Protein ID:ENSMUSP00000124523
Original member Current member NCBI NM_007808.5 NP_031834.1 Accepted alive Link to Nucleotide Sequence:NM_007808.5Link to Protein Sequence:NP_031834.1Re-query CCDS DB by Nucleotide ID:NM_007808Re-query CCDS DB by Protein ID:NP_031834Link to BLAST:NP_031834.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031834.1 105 P62897 105 100% 0 0

Chromosomal Locations for CCDS 20131.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 50565237 50565385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 50565492 50565660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (318 nt):
ATGGGTGATGTTGAAAAAGGCAAGAAGATTTTTGTTCAGAAGTGTGCCCAGTGCCACACTGTGGAAAAGG
GAGGCAAGCATAAGACTGGACCAAATCTCCACGGTCTGTTCGGGCGGAAGACAGGCCAGGCTGCTGGATT
CTCTTACACAGATGCCAACAAGAACAAAGGCATCACCTGGGGAGAGGATACCCTGATGGAGTATTTGGAG
AATCCCAAAAAGTACATCCCTGGAACAAAAATGATCTTCGCTGGAATTAAGAAGAAGGGAGAAAGGGCAG
ACCTAATAGCTTATCTTAAAAAGGCTACTAATGAGTAA

Translation (105 aa):
MGDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAAGFSYTDANKNKGITWGEDTLMEYLE
NPKKYIPGTKMIFAGIKKKGERADLIAYLKKATNE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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