NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29795.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29795.1 Public Mus musculus 19 Cyp2c39 23 108 98 CCDS HistoryNCBI Gene:13098Re-query CCDS DB by CCDS ID:29795.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29795.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025968.4 ENSMUSP00000025968.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025968.4Link to Ensembl Protein Viewer:ENSMUSP00000025968.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000025968Re-query CCDS DB by Protein ID:ENSMUSP00000025968
Original member Current member NCBI NM_010003.2 NP_034133.2 Accepted alive Link to Nucleotide Sequence:NM_010003.2Link to Protein Sequence:NP_034133.2Re-query CCDS DB by Nucleotide ID:NM_010003Re-query CCDS DB by Protein ID:NP_034133Link to BLAST:NP_034133.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034133.2 490 P56656 490 100% 0 0

Chromosomal Locations for CCDS 29795.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 39510871 39511038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39513173 39513335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39513500 39513649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39536736 39536896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39538854 39539030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39560859 39561000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39563826 39564013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39566887 39567028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 39568013 39568194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1473 nt):
ATGGACCTTGTCACATTCCTAGTGCTCACTCTCTCTTCTCTCATTCTCCTCTCACTATGGAGACAGAGCT
GTGGCAGAGGGAGCCTCCCTCCTGGCCCCACTCCTTTCCCGATTATTGGTAATTTCCTTCAGATAGATAT
AAAAAACGTCAGCCAATCCTTAACCAATTTCTCAAAAGCCTATGGCCCTGTGTTCACTCTGTATTTGGGC
TCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAGGAGT
TTTCTGATAGAGGAAGCATTCCAATGGTAGAAAAGATTAATAACGGCCTTGGCATTGTTTTTAGCAATGG
AAACAGATGGAAAGAGATTAGGCGCTTCACACTCACGACCCTGCGAAATTTGGGAATGGGAAAAAGGAAC
ATTGAGGACCGTGTTCAAGAGGAAGCACAGTGTCTTGTGGAAGAACTAAGGAAAACCAAGGGCTCACCTT
GTGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCCATTATTTTCCAGGATCGTTT
TGATTATAAGGATAAAGATTTTCTTATGCTCATGGAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCC
CCATGGTTGCAGGTCTGCAATAATTTCCCCTTGCTCATTGACTATTGTCCAGGAAGTCATCACAAAGTAC
TAAAAAACGTCAAATATATTAGAAGTTACCTGTTGGAGAAAATAAAAGAACACCAAGAATCACTGGATGT
TACAAACCCTCGTGATTTTATTGATTATTACTTGATTAAACAAAAACAGGCAAATCACATCCAACAAGCA
GAATTTTCACTTGAAAATCTGGCCTGCACTATCAATAACCTCTTTGCTGCAGGGACAGAGACAACAAGCA
CAACACTGAGATATGCTCTCCTACTCCTGATGAAGTACCCAGATGTCACAGCTAAAGTCCAGGAAGAGAT
TGACCATGTGATTGGTAGACACCGCAGCCCCTGCATGCAGGACAGGAACCACATGCCCTATACCGATGCC
ATGATTCATGAGGTCCAGAGATTCATCAACCTTGTCCCTAACAACATACCCCGTGCAGTGACTTGTGACA
TTAAATTTAGGAACTACCTCATCCCCAAGGGAACAACAGTAGTAACGTCACTGACATCAGTTCTGCATGA
CAGCAAGGAGTTCCCAAACCCAGAGTTGTTTGACCCTGGCCACTTTCTAGATGCTAATGGAAACTTTAAG
AAAAGTGACCACTTCATGCCTTTCTCAGCAGGAAAACGTGTTTGTGCTGGAGAGGGCCTGGCCCGCATGG
AGCTGTTTCTATTCCTGACCACCATTTTACAGAACTTTAAACTGAAATCTCTGGTTCACCCAAAAGACAT
TGATATGATCCCATTTGTGAATGGATTAATAGCTCTGCCACCCCATTACCAGGTCTGCATCATTCCTCGC
TAA

Translation (490 aa):
MDLVTFLVLTLSSLILLSLWRQSCGRGSLPPGPTPFPIIGNFLQIDIKNVSQSLTNFSKAYGPVFTLYLG
SRPTVVLHGYEAVKEALIDHGEEFSDRGSIPMVEKINNGLGIVFSNGNRWKEIRRFTLTTLRNLGMGKRN
IEDRVQEEAQCLVEELRKTKGSPCDPTFILSCAPCNVICSIIFQDRFDYKDKDFLMLMEKLNENVKILSS
PWLQVCNNFPLLIDYCPGSHHKVLKNVKYIRSYLLEKIKEHQESLDVTNPRDFIDYYLIKQKQANHIQQA
EFSLENLACTINNLFAAGTETTSTTLRYALLLLMKYPDVTAKVQEEIDHVIGRHRSPCMQDRNHMPYTDA
MIHEVQRFINLVPNNIPRAVTCDIKFRNYLIPKGTTVVTSLTSVLHDSKEFPNPELFDPGHFLDANGNFK
KSDHFMPFSAGKRVCAGEGLARMELFLFLTTILQNFKLKSLVHPKDIDMIPFVNGLIALPPHYQVCIIPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH