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Report for CCDS37231.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37231.1 Public Mus musculus 15 Cbx5 23 108 98 CCDS HistoryNCBI Gene:12419Re-query CCDS DB by CCDS ID:37231.1Re-query CCDS DB by GeneID:12419See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37231.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108813.9 ENSMUSP00000104441.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108813.9Link to Ensembl Protein Viewer:ENSMUSP00000104441.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000108813Re-query CCDS DB by Protein ID:ENSMUSP00000104441
Original member Current member EBI ENSMUST00000118152.7 ENSMUSP00000113157.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118152.7Link to Ensembl Protein Viewer:ENSMUSP00000113157.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118152Re-query CCDS DB by Protein ID:ENSMUSP00000113157
Original member Current member EBI ENSMUST00000122182.1 ENSMUSP00000113158.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122182.1Link to Ensembl Protein Viewer:ENSMUSP00000113158.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122182Re-query CCDS DB by Protein ID:ENSMUSP00000113158
Original member Current member NCBI NM_001076789.2 NP_001070257.1 Accepted alive Link to Nucleotide Sequence:NM_001076789.2Link to Protein Sequence:NP_001070257.1Re-query CCDS DB by Nucleotide ID:NM_001076789Re-query CCDS DB by Protein ID:NP_001070257Link to BLAST:NP_001070257.1
Original member Current member NCBI NM_001110216.1 NP_001103686.1 Accepted alive Link to Nucleotide Sequence:NM_001110216.1Link to Protein Sequence:NP_001103686.1Re-query CCDS DB by Nucleotide ID:NM_001110216Re-query CCDS DB by Protein ID:NP_001103686Link to BLAST:NP_001103686.1
Original member Current member NCBI NM_001358950.1 NP_001345879.1 Accepted alive Link to Nucleotide Sequence:NM_001358950.1Link to Protein Sequence:NP_001345879.1Re-query CCDS DB by Nucleotide ID:NM_001358950Re-query CCDS DB by Protein ID:NP_001345879Link to BLAST:NP_001345879.1
Original member Current member NCBI NM_007626.3 NP_031652.1 Accepted alive Link to Nucleotide Sequence:NM_007626.3Link to Protein Sequence:NP_031652.1Re-query CCDS DB by Nucleotide ID:NM_007626Re-query CCDS DB by Protein ID:NP_031652Link to BLAST:NP_031652.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001070257.1 191 Q61686 191 100% 0 0
NP_001103686.1 191 Q61686 191 100% 0 0
NP_001345879.1 191 Q61686 191 100% 0 0
NP_031652.1 191 Q61686 191 100% 0 0

Chromosomal Locations for CCDS 37231.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 103199641 103199791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103200801 103200901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103205492 103205678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103213072 103213208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (576 nt):
ATGGGAAAGAAGACCAAGAGGACAGCCGACAGCTCTTCTTCAGAGGATGAGGAGGAATATGTGGTGGAAA
AGGTGTTGGACAGGCGCATGGTTAAGGGGCAAGTGGAATATCTGTTGAAGTGGAAAGGCTTTTCTGAGGA
GCACAATACTTGGGAACCTGAGAAGAACTTGGATTGTCCTGAACTAATTTCTGAGTTTATGAAAAAGTAT
AAGAAGATGAAGGAGGGTGAAAACAATAAGCCCAGGGAGAAATCAGAAGGAAACAAGAGGAAATCCAGTT
TCTCCAACAGCGCTGATGATATTAAATCTAAAAAAAAGAGAGAGCAAAGCAATGATATCGCTCGGGGCTT
TGAGAGAGGACTGGAACCAGAAAAGATCATCGGAGCAACAGATTCCTGCGGTGACTTAATGTTCTTAATG
AAATGGAAAGACACAGATGAAGCTGACCTGGTTCTTGCAAAAGAAGCTAACGTGAAGTGTCCACAGATTG
TGATAGCATTTTATGAAGAGAGACTGACGTGGCACGCATATCCAGAGGATGCGGAAAACAAAGAAAAAGA
AAGCGCGAAGAGCTAA

Translation (191 aa):
MGKKTKRTADSSSSEDEEEYVVEKVLDRRMVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKY
KKMKEGENNKPREKSEGNKRKSSFSNSADDIKSKKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLM
KWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPEDAENKEKESAKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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