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Report for CCDS19803.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19803.1 Public Mus musculus 5 Prkar1b 23 108 98 CCDS HistoryNCBI Gene:19085Re-query CCDS DB by CCDS ID:19803.1Re-query CCDS DB by GeneID:19085See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19803.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026973.13 ENSMUSP00000026973.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026973.13Link to Ensembl Protein Viewer:ENSMUSP00000026973.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000026973Re-query CCDS DB by Protein ID:ENSMUSP00000026973
Original member Current member EBI ENSMUST00000110890.7 ENSMUSP00000106515.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110890.7Link to Ensembl Protein Viewer:ENSMUSP00000106515.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110890Re-query CCDS DB by Protein ID:ENSMUSP00000106515
Original member Current member NCBI NM_001253890.1 NP_001240819.1 Accepted alive Link to Nucleotide Sequence:NM_001253890.1Link to Protein Sequence:NP_001240819.1Re-query CCDS DB by Nucleotide ID:NM_001253890Re-query CCDS DB by Protein ID:NP_001240819Link to BLAST:NP_001240819.1
Original member Current member NCBI NM_001359097.1 NP_001346026.1 Accepted alive Link to Nucleotide Sequence:NM_001359097.1Link to Protein Sequence:NP_001346026.1Re-query CCDS DB by Nucleotide ID:NM_001359097Re-query CCDS DB by Protein ID:NP_001346026Link to BLAST:NP_001346026.1
Original member Current member NCBI NM_001359098.1 NP_001346027.1 Accepted alive Link to Nucleotide Sequence:NM_001359098.1Link to Protein Sequence:NP_001346027.1Re-query CCDS DB by Nucleotide ID:NM_001359098Re-query CCDS DB by Protein ID:NP_001346027Link to BLAST:NP_001346027.1
Original member Current member NCBI NM_001359099.1 NP_001346028.1 Accepted alive Link to Nucleotide Sequence:NM_001359099.1Link to Protein Sequence:NP_001346028.1Re-query CCDS DB by Nucleotide ID:NM_001359099Re-query CCDS DB by Protein ID:NP_001346028Link to BLAST:NP_001346028.1
Original member Current member NCBI NM_001359100.1 NP_001346029.1 Accepted alive Link to Nucleotide Sequence:NM_001359100.1Link to Protein Sequence:NP_001346029.1Re-query CCDS DB by Nucleotide ID:NM_001359100Re-query CCDS DB by Protein ID:NP_001346029Link to BLAST:NP_001346029.1
Original member Current member NCBI NM_008923.3 NP_032949.3 Accepted alive Link to Nucleotide Sequence:NM_008923.3Link to Protein Sequence:NP_032949.3Re-query CCDS DB by Nucleotide ID:NM_008923Re-query CCDS DB by Protein ID:NP_032949Link to BLAST:NP_032949.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001240819.1 381 P12849 381 100% 0 0
NP_001346026.1 381 P12849 381 100% 0 0
NP_001346027.1 381 P12849 381 100% 0 0
NP_001346028.1 381 P12849 381 100% 0 0
NP_001346029.1 381 P12849 381 100% 0 0
NP_032949.3 381 P12849 381 100% 0 0

Chromosomal Locations for CCDS 19803.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 139018659 139018831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139020056 139020137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139037034 139037155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139042435 139042495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139050658 139050816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139062554 139062600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139063256 139063317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139106621 139106712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139108484 139108654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139127587 139127763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1146 nt):
ATGGCCTCCCCATCATGCTTCCACTCGGAGGATGAGGACTCTCTGAAAGGATGCGAGATGTACGTGCAGA
AACATGGCATCCAGCAGGTGCTCAAAGAATGCATTGTGCACCTCTGTGTCGCCAAGCCGGACCGGCCACT
GCGATTCCTCCGGGAGCACTTTGAGAAGTTGGAGAAGGAGGAAAACAGGCAGATCCTGGCTCGGCAGAAG
TCAAACTCCCAGTGTGATTCCCACGATGAGGAGATCTCCCCAACACCTCCAAACCCCGTGGTCAAGGCGC
GTCGCCGGCGGGGCGGTGTGAGTGCTGAAGTCTACACTGAAGAAGATGCTGTCTCCTACGTGAGGAAGGT
CATTCCCAAGGACTATAAGACCATGACCGCGCTGGCCAAGGCCATTTCTAAGAACGTGCTCTTTTCTCAC
CTGGACGACAACGAGAGAAGTGACATATTTGACGCCATGTTTCCTGTCACTCACATCGGTGGGGAAACAG
TCATACAGCAAGGGAATGAAGGAGATAATTTCTATGTGATTGACCAAGGAGAAGTAGATGTATATGTGAA
CGGGGAATGGGTGACCAACATCAGTGAGGGGGGAAGCTTCGGGGAGCTGGCTCTCATCTACGGCACCCCC
AGAGCGGCTACCGTGAAGGCCAAGACGGACCTCAAGCTCTGGGGTATCGACCGTGACAGCTACAGGCGCA
TCCTCATGGGAAGCACACTGAGGAAACGCAAGATGTATGAGGAGTTCCTCAGCAAAGTCTCCATCCTAGA
ATCCCTGGAGAAGTGGGAACGCCTGACTGTAGCTGATGCCCTGGAGCCTGTGCAGTTTGAAGATGGAGAG
AAAATTGTTGTGCAGGGGGAGCCTGGAGATGACTTCTACATCATCACAGAGGGCACTGCTTCAGTCCTCC
AGCGACGATCCCCCAATGAGGAGTACGTGGAAGTGGGGCGCCTTGGACCCTCTGACTACTTTGGGGAGAT
TGCCCTGCTGCTGAATCGGCCCCGTGCAGCCACTGTGGTGGCCCGGGGTCCCCTCAAGTGTGTGAAGTTA
GACCGGCCTCGTTTTGAGCGTGTCCTGGGCCCCTGCTCTGAGATCCTGAAGAGGAACATCCAGCGTTACA
ACAGCTTCATCTCCCTAACTGTCTGA

Translation (381 aa):
MASPSCFHSEDEDSLKGCEMYVQKHGIQQVLKECIVHLCVAKPDRPLRFLREHFEKLEKEENRQILARQK
SNSQCDSHDEEISPTPPNPVVKARRRRGGVSAEVYTEEDAVSYVRKVIPKDYKTMTALAKAISKNVLFSH
LDDNERSDIFDAMFPVTHIGGETVIQQGNEGDNFYVIDQGEVDVYVNGEWVTNISEGGSFGELALIYGTP
RAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGE
KIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYFGEIALLLNRPRAATVVARGPLKCVKL
DRPRFERVLGPCSEILKRNIQRYNSFISLTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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