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Report for CCDS30424.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30424.1 Public Mus musculus X Plp1 23 108 98 CCDS HistoryNCBI Gene:18823Re-query CCDS DB by CCDS ID:30424.1Re-query CCDS DB by GeneID:18823See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30424.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033800.12 ENSMUSP00000033800.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033800.12Link to Ensembl Protein Viewer:ENSMUSP00000033800.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000033800Re-query CCDS DB by Protein ID:ENSMUSP00000033800
Original member Current member NCBI NM_001359117.1 NP_001346046.1 Accepted alive Link to Nucleotide Sequence:NM_001359117.1Link to Protein Sequence:NP_001346046.1Re-query CCDS DB by Nucleotide ID:NM_001359117Re-query CCDS DB by Protein ID:NP_001346046Link to BLAST:NP_001346046.1
Original member Current member NCBI NM_001359119.1 NP_001346048.1 Accepted alive Link to Nucleotide Sequence:NM_001359119.1Link to Protein Sequence:NP_001346048.1Re-query CCDS DB by Nucleotide ID:NM_001359119Re-query CCDS DB by Protein ID:NP_001346048Link to BLAST:NP_001346048.1
Original member Current member NCBI NM_001359120.1 NP_001346049.1 Accepted alive Link to Nucleotide Sequence:NM_001359120.1Link to Protein Sequence:NP_001346049.1Re-query CCDS DB by Nucleotide ID:NM_001359120Re-query CCDS DB by Protein ID:NP_001346049Link to BLAST:NP_001346049.1
Original member Current member NCBI NM_011123.4 NP_035253.1 Accepted alive Link to Nucleotide Sequence:NM_011123.4Link to Protein Sequence:NP_035253.1Re-query CCDS DB by Nucleotide ID:NM_011123Re-query CCDS DB by Protein ID:NP_035253Link to BLAST:NP_035253.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346046.1 277 P60202-1 277 100% 0 0
NP_001346048.1 277 P60202-1 277 100% 0 0
NP_001346049.1 277 P60202-1 277 100% 0 0
NP_035253.1 277 P60202-1 277 100% 0 0

Chromosomal Locations for CCDS 30424.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 136822914 136822917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136831071 136831257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136831953 136832214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136833268 136833436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136834155 136834228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136835099 136835164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136836040 136836111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (834 nt):
ATGGGCTTGTTAGAGTGTTGTGCTAGATGTCTGGTAGGGGCCCCCTTTGCTTCCCTGGTGGCCACTGGAT
TGTGTTTCTTTGGAGTGGCACTGTTCTGTGGATGTGGACATGAAGCTCTCACTGGTACAGAAAAGCTAAT
TGAGACCTATTTCTCCAAAAACTACCAGGACTATGAGTATCTCATTAATGTGATTCATGCTTTCCAGTAT
GTCATCTATGGAACTGCCTCTTTCTTCTTCCTTTATGGGGCCCTCCTGCTGGCTGAGGGCTTCTACACCA
CCGGCGCTGTCAGGCAGATCTTTGGCGACTACAAGACCACCATCTGCGGCAAGGGCCTGAGCGCAACGGT
AACAGGGGGCCAGAAGGGGAGGGGTTCCAGAGGCCAACATCAAGCTCATTCTTTGGAGCGGGTGTGTCAT
TGTTTGGGAAAATGGCTAGGACATCCCGACAAGTTTGTGGGCATCACCTATGCCCTGACTGTTGTATGGC
TCCTGGTGTTTGCCTGCTCGGCTGTACCTGTGTACATTTACTTCAATACCTGGACCACCTGTCAGTCTAT
TGCCTTCCCTAGCAAGACCTCTGCCAGTATAGGCAGTCTCTGCGCTGATGCCAGAATGTATGGTGTTCTC
CCATGGAATGCTTTCCCTGGCAAGGTTTGTGGCTCCAACCTTCTGTCCATCTGCAAAACAGCTGAGTTCC
AAATGACCTTCCACCTGTTTATTGCTGCGTTTGTGGGTGCTGCGGCCACACTAGTTTCCCTGCTCACCTT
CATGATTGCTGCCACTTACAACTTCGCCGTCCTTAAACTCATGGGCCGAGGCACCAAGTTCTGA

Translation (277 aa):
MGLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEYLINVIHAFQY
VIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGGQKGRGSRGQHQAHSLERVCH
CLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNTWTTCQSIAFPSKTSASIGSLCADARMYGVL
PWNAFPGKVCGSNLLSICKTAEFQMTFHLFIAAFVGAAATLVSLLTFMIAATYNFAVLKLMGRGTKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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