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Report for CCDS19405.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19405.1 Public Mus musculus 5 Dck 23 108 98 CCDS HistoryNCBI Gene:13178Re-query CCDS DB by CCDS ID:19405.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19405.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031311.9 ENSMUSP00000031311.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031311.9Link to Ensembl Protein Viewer:ENSMUSP00000031311.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000031311Re-query CCDS DB by Protein ID:ENSMUSP00000031311
Original member Current member NCBI NM_007832.4 NP_031858.1 Accepted alive Link to Nucleotide Sequence:NM_007832.4Link to Protein Sequence:NP_031858.1Re-query CCDS DB by Nucleotide ID:NM_007832Re-query CCDS DB by Protein ID:NP_031858Link to BLAST:NP_031858.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031858.1 260 P43346 260 100% 0 0

Chromosomal Locations for CCDS 19405.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 88765256 88765346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88769604 88769719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88772630 88772823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88774082 88774229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88776857 88776972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88778362 88778452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88781220 88781246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (783 nt):
ATGGCCACCCCACCTAAGAGGTTCTGCCCTTCTCCCTCGACCAGCTCCGAGGGGACCCGCATCAAGAAGA
TCTCCATCGAGGGGAACATCGCTGCTGGGAAGTCAACGTTTGTGAATATCCTAAAGCAAGCCTCTGAGGA
TTGGGAAGTGGTTCCCGAGCCTGTGGCCAGGTGGTGCAACGTGCAGAGCACTCAAGAGGAATTTGAGGAA
TTGACAACGTCTCAGAAGAGCGGTGGAAATGTTCTTCAAATGATGTATGAGAAACCTGAACGGTGGTCTT
TCACCTTCCAGTCATATGCCTGTCTCAGCCGGATCCGAGCCCAGCTAGCCTCTCTCAATGGCAAGCTCAA
AGATGCAGAGAAACCTGTATTATTTTTTGAAAGATCTGTGTATAGTGACAGGTACATTTTCGCTTCTAAT
TTGTACGAATCTGACTGCATGAATGAAACAGAGTGGACCATATATCAAGACTGGCACGACTGGATGAACA
GCCAGTTTGGCCAAAGCCTTGAATTGGATGGAATAATCTATCTTCGAGCTACTCCCGAGAAATGCTTAAA
CAGAATATACCTACGGGGAAGAAATGAAGAACAAGGCATTCCTCTTGAATATTTAGAGAAACTTCACTAT
AAACATGAAAGCTGGCTCCTTCATCGGACTCTGAAAACCAGCTTTGATTATCTGCAAGAGGTGCCCGTCC
TCACACTGGATGTTAATGAAGACTTTAAAGACAAACACGAAAGCCTGGTTGAAAAGGTCAAAGAATTTCT
GAGTACTTTGTGA

Translation (260 aa):
MATPPKRFCPSPSTSSEGTRIKKISIEGNIAAGKSTFVNILKQASEDWEVVPEPVARWCNVQSTQEEFEE
LTTSQKSGGNVLQMMYEKPERWSFTFQSYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASN
LYESDCMNETEWTIYQDWHDWMNSQFGQSLELDGIIYLRATPEKCLNRIYLRGRNEEQGIPLEYLEKLHY
KHESWLLHRTLKTSFDYLQEVPVLTLDVNEDFKDKHESLVEKVKEFLSTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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