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Report for CCDS19753.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19753.1 Public Mus musculus 5 Alkbh4 23 108 98 CCDS HistoryNCBI Gene:72041Re-query CCDS DB by CCDS ID:19753.1Re-query CCDS DB by GeneID:72041See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19753.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100568.2 ENSMUSP00000098134.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100568.2Link to Ensembl Protein Viewer:ENSMUSP00000098134.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000100568Re-query CCDS DB by Protein ID:ENSMUSP00000098134
Original member Current member NCBI NM_001359415.1 NP_001346344.1 Accepted alive Link to Nucleotide Sequence:NM_001359415.1Link to Protein Sequence:NP_001346344.1Re-query CCDS DB by Nucleotide ID:NM_001359415Re-query CCDS DB by Protein ID:NP_001346344Link to BLAST:NP_001346344.1
Original member Current member NCBI NM_001359416.1 NP_001346345.1 Accepted alive Link to Nucleotide Sequence:NM_001359416.1Link to Protein Sequence:NP_001346345.1Re-query CCDS DB by Nucleotide ID:NM_001359416Re-query CCDS DB by Protein ID:NP_001346345Link to BLAST:NP_001346345.1
Original member Current member NCBI NM_028070.1 NP_082346.1 Accepted alive Link to Nucleotide Sequence:NM_028070.1Link to Protein Sequence:NP_082346.1Re-query CCDS DB by Nucleotide ID:NM_028070Re-query CCDS DB by Protein ID:NP_082346Link to BLAST:NP_082346.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346344.1 215 Q9D8F1-2 215 100% 0 0
NP_001346345.1 215 Q9D8F1-2 215 100% 0 0
NP_082346.1 215 Q9D8F1-2 215 100% 0 0

Chromosomal Locations for CCDS 19753.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 136139476 136139535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136140179 136140766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (648 nt):
ATGGTGCGTCTGATGGACTGCGACCCCTGGAAGCTCTCACAGTCTGGGAGGAAGAAGCAGGACTATGGCC
CTAAAGTTAATTTTCGGAAGCAGAAGCTGAAGATGGCAGGCTTCCAGGGTCTCCCTGGCTTTAGCCAGAA
GGTAGTCCAGAGAATGGGCCTTTACCCGGGGCTGGAGGACTTCCAGCCTGTGGAACAGTGCAATCTGGAC
TACAGCCCTGAGCGGGGCTCCGCCATCGACCCCCACTTGGACGACGCCTGGCTGTGGGGCGAGCGGCTGG
TGAGCCTCAACCTCCTGTCAGCCACAGTGGTGTCCATGTCTCCAGAGGCCCCTGGCAGCCTGCTTCTCTG
CTCAGCCCCCTCCGTCAGACCTGATGCTTTTGAGGACAGCCTTGTGGCTCCTAGCAGGTCTGTCCCCTGC
CAGGAGGTGGAGGTGGCCATCACAGTACCCCGCCGCTCCTTGCTGGTGCTTACAGGGGCCGCGAGGCACC
AGTGGACACACGCCATCCACCGCAGACACATCAAGGCCCGCCGTGTGTGCGCCACCTTCAGGGAGCTGTC
CAGTGAGTTCCTGCCTGGAGGGAAGCAGCAAGAACTGGGCCAAGAACTGCTGCAGGCTGCACTCTCGTTC
CAGGGGAGACCGGTGTGA

Translation (215 aa):
MVRLMDCDPWKLSQSGRKKQDYGPKVNFRKQKLKMAGFQGLPGFSQKVVQRMGLYPGLEDFQPVEQCNLD
YSPERGSAIDPHLDDAWLWGERLVSLNLLSATVVSMSPEAPGSLLLCSAPSVRPDAFEDSLVAPSRSVPC
QEVEVAITVPRRSLLVLTGAARHQWTHAIHRRHIKARRVCATFRELSSEFLPGGKQQELGQELLQAALSF
QGRPV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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