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Report for CCDS3521.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3521.1 Public Homo sapiens 4 TMPRSS11B 24 110 108 CCDS HistoryNCBI Gene:132724Re-query CCDS DB by CCDS ID:3521.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3521.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000332644.6 ENSP00000330475.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000332644.6Link to Ensembl Protein Viewer:ENSP00000330475.5Re-query CCDS DB by Nucleotide ID:ENST00000332644Re-query CCDS DB by Protein ID:ENSP00000330475
Original member Current member NCBI NM_182502.3 NP_872308.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_182502.3Link to Protein Sequence:NP_872308.2Re-query CCDS DB by Nucleotide ID:NM_182502Re-query CCDS DB by Protein ID:NP_872308Link to BLAST:NP_872308.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_872308.2 416 Q86T26 416 100% 0 0

Chromosomal Locations for CCDS 3521.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 68227911 68228072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 68228742 68228884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 68229257 68229516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 68231203 68231380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 68232378 68232416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 68234463 68234623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 68236002 68236069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 68236151 68236266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 68241689 68241804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 68245551 68245558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1251 nt):
ATGTACAGGCACGGCATATCTTCCCAAAGATCTTGGCCACTATGGACTACGATCTTTATTTTTCTTGGAG
TGGCGGCAATCTTGGGAGTAACCATTGGTCTTCTTGTTCATTTTCTGGCAGTTGAGAAGACTTACTATTA
TCAAGGTGATTTTCATATTTCTGGAGTCACATACAATGATAATTGTGAAAACGCAGCTTCACAAGCCAGC
ACAAATCTAAGCAAAGATATTGAGACTAAGATGTTAAATGCATTTCAAAATTCCAGTATATATAAGGAAT
ATGTCAAATCTGAGGTCATCAAACTTCTGCCTAATGCCAATGGTTCAAATGTGCAGTTACAGCTGAAATT
CAAGTTTCCTCCAGCAGAAGGAGTTAGCATGAGGACTAAAATCAAGGCTAAATTACATCAGATGTTGAAA
AACAACATGGCATCCTGGAATGCAGTTCCTGCTTCCATTAAACTCATGGAAATCAGCAAGGCTGCTTCTG
AAATGCTTACCAACAACTGTTGTGGGAGACAAGTAGCCAACAGTATCATAACTGGCAACAAAATTGTGAA
TGGAAAAAGCTCCCTGGAGGGGGCATGGCCATGGCAGGCCAGCATGCAATGGAAAGGCCGTCACTACTGT
GGAGCCTCTCTGATCAGCAGCAGGTGGCTATTATCTGCAGCTCACTGCTTTGCTAAGAAAAATAATTCAA
AAGATTGGACTGTCAACTTTGGAATTGTAGTAAATAAACCATATATGACACGGAAAGTCCAAAACATTAT
TTTTCATGAAAATTATAGCAGTCCTGGGCTTCATGATGATATTGCCCTTGTGCAGCTTGCTGAAGAAGTT
TCTTTTACAGAGTACATTCGTAAGATTTGTCTTCCTGAAGCCAAAATGAAGCTCTCAGAAAATGACAATG
TTGTAGTTACAGGTTGGGGAACACTTTATATGAATGGTTCATTTCCAGTGATACTTCAAGAAGACTTTTT
GAAGATTATTGACAACAAAATTTGCAATGCCTCATATGCATACTCTGGCTTTGTGACTGATACAATGTTA
TGTGCTGGATTTATGTCAGGAGAAGCTGATGCATGTCAGAATGATTCTGGTGGACCACTAGCTTACCCTG
ATTCCAGAAATATCTGGCATCTTGTTGGAATAGTAAGCTGGGGTGATGGATGTGGTAAAAAGAATAAGCC
AGGTGTCTATACTCGAGTGACTTCTTATCGCAATTGGATTACATCCAAGACTGGACTCTGA

Translation (416 aa):
MYRHGISSQRSWPLWTTIFIFLGVAAILGVTIGLLVHFLAVEKTYYYQGDFHISGVTYNDNCENAASQAS
TNLSKDIETKMLNAFQNSSIYKEYVKSEVIKLLPNANGSNVQLQLKFKFPPAEGVSMRTKIKAKLHQMLK
NNMASWNAVPASIKLMEISKAASEMLTNNCCGRQVANSIITGNKIVNGKSSLEGAWPWQASMQWKGRHYC
GASLISSRWLLSAAHCFAKKNNSKDWTVNFGIVVNKPYMTRKVQNIIFHENYSSPGLHDDIALVQLAEEV
SFTEYIRKICLPEAKMKLSENDNVVVTGWGTLYMNGSFPVILQEDFLKIIDNKICNASYAYSGFVTDTML
CAGFMSGEADACQNDSGGPLAYPDSRNIWHLVGIVSWGDGCGKKNKPGVYTRVTSYRNWITSKTGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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