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Report for CCDS90560.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90560.1 Public Mus musculus 9 Tmprss5 23 108 98 CCDS HistoryNCBI Gene:80893Re-query CCDS DB by CCDS ID:90560.1Re-query CCDS DB by GeneID:80893See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90560.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165088.7 ENSMUSP00000132181.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165088.7Link to Ensembl Protein Viewer:ENSMUSP00000132181.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165088Re-query CCDS DB by Protein ID:ENSMUSP00000132181
Original member NCBI NM_001359460.1 NP_001346389.1 Updated not alive Link to Nucleotide Sequence:NM_001359460.1Link to Protein Sequence:NP_001346389.1Re-query CCDS DB by Nucleotide ID:NM_001359460Re-query CCDS DB by Protein ID:NP_001346389
Current member NCBI NM_001359460.2 NP_001346389.1 Accepted alive Link to Nucleotide Sequence:NM_001359460.2Link to Protein Sequence:NP_001346389.1Re-query CCDS DB by Nucleotide ID:NM_001359460Re-query CCDS DB by Protein ID:NP_001346389Link to BLAST:NP_001346389.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346389.1 455 Q9ER04-1 455 100% 0 0

Chromosomal Locations for CCDS 90560.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 49102821 49102823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49106114 49106216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49106501 49106599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49107077 49107199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49109002 49109137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49109342 49109455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49111468 49111511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49112188 49112350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49113124 49113302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49114494 49114592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49115033 49115175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49115465 49115617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49116983 49116991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1368 nt):
ATGAGTCCAACACTGGATGACCAAAGCCCAATGGAGATTCGGTGCACGGAAGAGGGTGCTGGGCCTGGGA
TCTTCAGAATGGAGTTGGGAGACCAGAGGCAATCCATTTCTCAGTCCCAACGCTGGTGCTGCCTGCAACG
TGGCTGTGTTATACTGGGCGTCCTGGGGCTTCTGGCTGGAGCAGGCATTGCTTCATGGCTCTTAGTGTTG
TATCTATGGCCAGCTGCCTCTCCATCCATCTCTGGGACGTTGCAGGAGGAGGAGATGACTTTGAACTGTC
CAGGAGTGAGCCGTGAGGAAGAGCTCCTTCCATCTCTTCCCAAAACAGTATCTTTCAGAATAAATGGAGA
GGATCTTCTGCTTCAAGTACAAGTAAGAGCTCGGCCAGACTGGCTCCTGGTCTGCCACGAGGGCTGGAGC
CCCGCCCTGGGCATGCACATCTGCAAGAGTCTTGGGCATATCAGGCTTACTCAACACAAGGCCGTGAATC
TGTCTGACATCAAGCTCAACAGATCCCAGGAGTTTGCTCAACTCTCTGCTAGACCGGGAGGCCTTGTAGA
GGAGTCATGGAAACCCAGCGCTAACTGTCCTTCTGGCCGAATTGTTTCTCTCAAATGTTCTGAGTGTGGG
GCAAGGCCTCTGGCTTCTCGAATAGTTGGCGGCCAAGCTGTGGCTTCTGGGCGCTGGCCATGGCAAGCTA
GCGTGATGCTTGGCTCCCGGCACACGTGTGGGGCCTCTGTGTTGGCACCACACTGGGTAGTGACTGCTGC
CCACTGCATGTACAGTTTCAGGCTGTCCCGCCTATCCAGCTGGCGGGTTCATGCAGGGCTGGTCAGCCAC
GGTGCTGTCCGACAACACCAGGGAACTATGGTGGAGAAGATCATTCCCCACCCTTTGTACAGTGCCCAGA
ACCATGACTATGATGTGGCTCTGCTGCAGCTCCGGACACCAATCAACTTCTCAGACACCGTGGGCGCTGT
GTGCTTGCCGGCCAAGGAGCAGCACTTTCCATGGGGGTCGCAGTGCTGGGTGTCTGGCTGGGGCCACACC
GACCCCAGCCATACTCATAGCTCAGATACACTGCAGGACACAATGGTACCCCTGCTCAGCACCTACCTCT
GCAACAGCTCATGCATGTACAGTGGGGCACTTACACACCGCATGTTGTGTGCTGGCTACCTGGATGGAAG
GGCAGACGCATGCCAGGGAGACAGCGGGGGACCCCTGGTATGTCCCAGTGGTGACACGTGGCACCTTGTA
GGGGTGGTCAGCTGGGGTCGTGGCTGTGCAGAGCCCAATCGCCCAGGTGTCTATGCCAAGGTAGCAGAGT
TCCTGGACTGGATCCATGACACTGTGCAGGTCCGCTAG

Translation (455 aa):
MSPTLDDQSPMEIRCTEEGAGPGIFRMELGDQRQSISQSQRWCCLQRGCVILGVLGLLAGAGIASWLLVL
YLWPAASPSISGTLQEEEMTLNCPGVSREEELLPSLPKTVSFRINGEDLLLQVQVRARPDWLLVCHEGWS
PALGMHICKSLGHIRLTQHKAVNLSDIKLNRSQEFAQLSARPGGLVEESWKPSANCPSGRIVSLKCSECG
ARPLASRIVGGQAVASGRWPWQASVMLGSRHTCGASVLAPHWVVTAAHCMYSFRLSRLSSWRVHAGLVSH
GAVRQHQGTMVEKIIPHPLYSAQNHDYDVALLQLRTPINFSDTVGAVCLPAKEQHFPWGSQCWVSGWGHT
DPSHTHSSDTLQDTMVPLLSTYLCNSSCMYSGALTHRMLCAGYLDGRADACQGDSGGPLVCPSGDTWHLV
GVVSWGRGCAEPNRPGVYAKVAEFLDWIHDTVQVR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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