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Report for CCDS36671.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36671.1 Public Mus musculus 13 Uimc1 23 108 98 CCDS HistoryNCBI Gene:20184Re-query CCDS DB by CCDS ID:36671.1Re-query CCDS DB by GeneID:20184See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 36671.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026997.11 ENSMUSP00000026997.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026997.11Link to Ensembl Protein Viewer:ENSMUSP00000026997.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000026997Re-query CCDS DB by Protein ID:ENSMUSP00000026997
Original member Current member NCBI NM_001359757.1 NP_001346686.1 Accepted alive Link to Nucleotide Sequence:NM_001359757.1Link to Protein Sequence:NP_001346686.1Re-query CCDS DB by Nucleotide ID:NM_001359757Re-query CCDS DB by Protein ID:NP_001346686Link to BLAST:NP_001346686.1
Original member Current member NCBI NM_011307.3 NP_035437.1 Accepted alive Link to Nucleotide Sequence:NM_011307.3Link to Protein Sequence:NP_035437.1Re-query CCDS DB by Nucleotide ID:NM_011307Re-query CCDS DB by Protein ID:NP_035437Link to BLAST:NP_035437.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346686.1 727 Q5U5Q9-1 727 99.8624% 0 1
NP_035437.1 727 Q5U5Q9-1 727 99.8624% 0 1

Chromosomal Locations for CCDS 36671.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 55028520 55028718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55029416 55029458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55030953 55031016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55034889 55035066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55040545 55040623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55050741 55050894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55055975 55056078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55060266 55060342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55069722 55069807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55075258 55075994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55076302 55076407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55077403 55077527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55085610 55085694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55093127 55093273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2184 nt):
ATGCCACGAAGGAAGAAAAAAATTAAAGAGGCCTCTGAAAGCCAGAACTTGGAGAAGAAGGATCTGGAAA
CAAGCAGTTGTGTCAGTATAAAGAAGAAGCGTAGACTTGAGGACTTACTCATAGTGATATCCGATAGCGA
TGGAGAGGAAACAAAAGAGGAGAATGGATTGCAGAAAACGAAGACAAAACAGTCGAACAGATCAAAGTGT
TTGGCTAAAAGAAAAGTTGCACACATGTCAGAAGAAGAACAATTTGCTTTGGCTCTCAAGATGAGTGAGC
AGGAAGCTAGGGAGGTGAATAACCAGGAGGAGAAAGAAGAGGAGCTCTTGCGGAAAGCCATTGCTGAAAG
CCTGAATAGTTGCTGGTCTTCTGCTGCTTCTGCTACCAGATCTCGACCTCTGGCTGCTGAACTATCTTCA
CATTCCCATCAAGAGAACACCAAAGACTCTGGGACCACTGAAGGCGTATGGCAGCTGGTACCTCCATCAC
TGTGTAAAGGCTCACATGTCAGTCAGGGAAACGAGGCTGAGCAAAGAAAGGAGCCCTGGGACCACAATGA
AAACACTGAAGAGGAGCCGGTCTCTGGCAGCTCAGGAAGCTGGGACCAGTCAAGCCAGCCAGTGTTTGAG
AATGAGAACGTTAAATGTTTTGACAGATGTACTGGCCACTTGGCTGAGCACACACAGTGTGGGAAGCCAC
AGGAAAGTACTGGGAGTGGTTATGCTTTTTCCAAAGCTGTCCAGGGTAGGGGGGACACGTCTAGGCAATG
CCTTCCTATCCCAGCAGACACAAAAGGTCTCCAGGACACTGGGGGCACTGTGCACTACTACTGGGGTATT
CCATTCTGCCCTGCTGGAGTAGATCCCAATCAATACACCAATGTCATTCTCTGCCAGTTAGAGGTTTATC
AGAAGAGCCTGAAAATGGCTCAGAGACAGCTTGTTAAAAAAAGAGGGTTTGGGGAACCAGTGTTACCTAG
ACCTCCTTTTCTGATCCAGAATGAATGTGGCCAAGAAGATCAGACTAGTGACAAAAATGAAGGCATCTCA
GAAGATATGGGAGATGAAGCCAAAGAGGAAAGGCAGGAATCTAGGGCATCTGTCTGGCACTCAGAAACCA
AGGATTTTCAAAAAAGTCCAATTAAAAGCTTGAAACAGAAACTTTTGTTGGAGGAAGAACCAACAACCAG
TCGTGGTCAGTCTTCCCAAGGTCTGTTTGTTGAAGAAACCTCTGAAGAAGGTCTGAAGAGTTCTGAAGGA
GACAACTCTGTGCCCACCACGCAAAGCATTGCAGCTTTGACCAGTAAGAGAAGTTTAGTTCTTATGCCGG
AAAGTTCTGCAGAAGAAACCACTGTTTGCCCTGAGACACAGTTAAGTTTCCTTGAACCCCTTGACCTCAA
TAGAGAAGACTCTCCAGATAGCAGAGAGCTCCCCATTGAAGTAAGGATGGCAGTGGGCGATAAGCAGGTT
GCTAATAGGGAAGATTGTATGAAGGAAAACCCTCCTCCTGCAGTCTCATCTAGTACCCGGGTATCCTGCC
CACTGTGTAACCAAGACTTTCCTCCCACAAAGATTGAACAGCATGCCATGTACTGCAATGGTCTGATGGA
GCAGGAAACAGTGTTGACTCGGAGACGAAGAGAGGCCAAGAACAAGAGTGACGGTCGGACAGCTGCACAG
CCGGCTCTGGATGCCAACAGGAAGGAGAAGTGTTATCTATGTAAGTCCCTGGTTCCACTTGGGGAGTATC
AGTGCCATGTGGAGGCCTGTCTCCAGCTTGCAAAGGTTGACAGAGAAGATGGGATTGAAGGGACAAGGAG
ACCAAGGGTGTGTGCACCTGTGGAGGGGAAACAACAGCAGCGGCTGAAGAAGTCAAAGGACAAAGGCCAT
AGTCAAGGCCGACTCCTCAGTCTCTTGGAGCAGTCTGAGCATAGGACCACAGGTGTAGAGAAAAAACCCA
AGTATTCGGAAGTAAGAACCTTCAGGATGCCCTCACCAGAGGTGGAAGAGGCTAGCTGCAGCAGAGAGAT
GCAGAGTACCCTCTCACAGCTCAACTTAAATGAGTCTCCCATCAAGTCTTTTGTTCCTGTTTCAGAAGCT
ACAAATTGCTTAGTGGACTTTAAAGAACAGTTTGCTTTCCGGTCACGAACTAAATCAGGCAGAGGAAGGA
GGAGAAAATCTTGA

Translation (727 aa):
MPRRKKKIKEASESQNLEKKDLETSSCVSIKKKRRLEDLLIVISDSDGEETKEENGLQKTKTKQSNRSKC
LAKRKVAHMSEEEQFALALKMSEQEAREVNNQEEKEEELLRKAIAESLNSCWSSAASATRSRPLAAELSS
HSHQENTKDSGTTEGVWQLVPPSLCKGSHVSQGNEAEQRKEPWDHNENTEEEPVSGSSGSWDQSSQPVFE
NENVKCFDRCTGHLAEHTQCGKPQESTGSGYAFSKAVQGRGDTSRQCLPIPADTKGLQDTGGTVHYYWGI
PFCPAGVDPNQYTNVILCQLEVYQKSLKMAQRQLVKKRGFGEPVLPRPPFLIQNECGQEDQTSDKNEGIS
EDMGDEAKEERQESRASVWHSETKDFQKSPIKSLKQKLLLEEEPTTSRGQSSQGLFVEETSEEGLKSSEG
DNSVPTTQSIAALTSKRSLVLMPESSAEETTVCPETQLSFLEPLDLNREDSPDSRELPIEVRMAVGDKQV
ANREDCMKENPPPAVSSSTRVSCPLCNQDFPPTKIEQHAMYCNGLMEQETVLTRRRREAKNKSDGRTAAQ
PALDANRKEKCYLCKSLVPLGEYQCHVEACLQLAKVDREDGIEGTRRPRVCAPVEGKQQQRLKKSKDKGH
SQGRLLSLLEQSEHRTTGVEKKPKYSEVRTFRMPSPEVEEASCSREMQSTLSQLNLNESPIKSFVPVSEA
TNCLVDFKEQFAFRSRTKSGRGRRRKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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