NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS3826.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3826.1 Public Homo sapiens 4 SPATA4 24 110 108 CCDS HistoryNCBI Gene:132851Re-query CCDS DB by CCDS ID:3826.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3826.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000280191.7 ENSP00000280191.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000280191.7Link to Ensembl Protein Viewer:ENSP00000280191.2Re-query CCDS DB by Nucleotide ID:ENST00000280191Re-query CCDS DB by Protein ID:ENSP00000280191
Original member Current member NCBI NM_144644.4 NP_653245.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144644.4Link to Protein Sequence:NP_653245.2Re-query CCDS DB by Nucleotide ID:NM_144644Re-query CCDS DB by Protein ID:NP_653245Link to BLAST:NP_653245.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653245.2 305 Q8NEY3 305 100% 0 0

Chromosomal Locations for CCDS 3826.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 176184780 176184892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 176188119 176188235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 176192627 176192847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 176192958 176193076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 176193453 176193582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 176195345 176195562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGGCTGCCGCCGGCCAGGAAAAAGGGTATTTGACACAGACTGCGGCAGCCCTAGACAAGTCACCGTCAC
TTTCGCCACAGCTAGCAGCTCCCATCCGAGGGAGGCCTAAGAAGTGTCTGGTCTATCCGCATGCGCCGAA
GAGCTCCCGCTTGTCTCGTTCCGTTCTGCGTTGGCTTCAGGGTCTGGATCTCAGCTTCTTCCCCAGGAAC
ATCAACAGAGATTTTTCAAATGGCTTCCTAATTGCAGAAATATTCTGTATATATTACCCCTGGGAACTTG
AATTATCATCCTTTGAAAACGGGACCTCTTTAAAAGTCAAGTTGGATAACTGGGCACAGTTGGAGAAGTT
CCTGGCAAGAAAAAAATTTAAATTACCTAAAGAACTAATCCATGGAACAATTCATTGTAAAGCTGGAGTG
CCTGAAATATTGATAGAAGAGGTTTACACTTTATTAACACATCGAGAAATTAAAAGTATCCAGGATGACT
TTGTGAATTTCACGGACTATAGCTACCAGATGCGTTTACCCCTGGTTTCCAGGTCTACAGTTTCGAAGTC
TATTAAAGATAACATTAGGTTATCAGAATTACTAAGCAATCCCAACATGCTGACCAATGAACTTAAAGCG
GAGTTCCTCATCCTTTTACATATGTTGCAAAGAAAATTAGGCAGAAAATTGAATCCAGAATGGTTTGATG
TGAAACCAACAGTGGGAGAAGTTACTCTCAATCACCTTCCTGCCCAAGCCTCTGGGCGCAGATATAATTT
AAAAGTTAAAAGAGGAAGAGTTGTCCCTGTTTTACCAAATATAGGTAGTGGTGGCAGTTCACATAGAGAA
ATACATGTGAAGCAAGCTGGACAACATTCTTATTACTCTGCTATGAAACCTATCAGAAACATGGACAAGA
AACCTTGA

Translation (305 aa):
MAAAGQEKGYLTQTAAALDKSPSLSPQLAAPIRGRPKKCLVYPHAPKSSRLSRSVLRWLQGLDLSFFPRN
INRDFSNGFLIAEIFCIYYPWELELSSFENGTSLKVKLDNWAQLEKFLARKKFKLPKELIHGTIHCKAGV
PEILIEEVYTLLTHREIKSIQDDFVNFTDYSYQMRLPLVSRSTVSKSIKDNIRLSELLSNPNMLTNELKA
EFLILLHMLQRKLGRKLNPEWFDVKPTVGEVTLNHLPAQASGRRYNLKVKRGRVVPVLPNIGSGGSSHRE
IHVKQAGQHSYYSAMKPIRNMDKKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH