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Report for CCDS88594.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88594.1 Public Mus musculus 14 Samd8 23 108 98 CCDS HistoryNCBI Gene:67630Re-query CCDS DB by CCDS ID:88594.1Re-query CCDS DB by GeneID:67630See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88594.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119430.2 ENSMUSP00000112803.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119430.2Link to Ensembl Protein Viewer:ENSMUSP00000112803.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119430Re-query CCDS DB by Protein ID:ENSMUSP00000112803
Original member Current member NCBI NM_001359953.1 NP_001346882.1 Accepted alive Link to Nucleotide Sequence:NM_001359953.1Link to Protein Sequence:NP_001346882.1Re-query CCDS DB by Nucleotide ID:NM_001359953Re-query CCDS DB by Protein ID:NP_001346882Link to BLAST:NP_001346882.1

Chromosomal Locations for CCDS 88594.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 21774978 21775555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21780086 21780181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21783679 21783796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21792404 21792554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 21792937 21793241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1248 nt):
ATGGCAGGTCCTAGTCAACTCTGCATTCGCCGCTGGACTACCAAGCATGTGGCTGTGTGGCTGAAGGACG
AAGGTTTCTTTGAGTATGTGGACATTTTATGCAACAAGCACCGCCTTGATGGAATCACATTGCTCACGCT
GACTGAATATGATCTCCGCTCTCCTCCTCTGGAAATCAAAGTCCTAGGAGACATTAAACGGTTAATGCTC
TCAGTCCGAAAATTGCAGAAAATACATACTGATGTTTTGGAAGAGATGGGCTACAACAGTGACAGTCCTA
TGAGTCCCATGACTCCATTCCTTAGTGCTCTTCAGAGTGCAGACTGGCTCTGTAACGGAGAGCCCACACA
CAGCTGTGATGGGCCCATCCCTGACTTGAGTTCTGATCAGTACCAGTACATGAATGGCAAAAACAAACAT
TCTGCTCGAAGACTGGACCCAGAGTACTGGAAGACCATCCTGAGTTGTGTATATGTTTTTATAGTATTTG
GGTTTACGTCTTTCATTATGGTTATTGTTCATGAGCGTGTGCCTGACATGCAGACCTACCCACCACTCCC
AGATATATTCCTAGACAGTGTTCCTAGGATCCCGTGGGCCTTCTCCATGACCGAAGTGTGTGGCGTGATT
CTGTGCTACATTTGGATCCTGGTTCTTCTTCTTCACAAGCACAGGTCAATCCTTCTGCGAAGGCTCTGTA
GTCTGATGGGCACTGTATTCTTGCTTCGCTGCTTTACCATGTTTGTGACCTCCCTCTCCGTGCCAGGACA
GCACCTGCAGTGTACTGGAAAGATATATGGAAGTGTGTGGGAGAAACTACGACGGGCATTTGCCATCTGG
AGCGGCTTTGGAATGACTCTGACTGGCGTCCACACTTGTGGAGACTACATGTTCAGTGGCCACACAGTTG
TTCTAACCATGCTGAATTTCTTTGTCACAGAGTATACACCAAGAAGCTGGAATTTCTTGCACACTCTATC
CTGGGTTCTCAACCTCTTTGGAATCTTCTTCATCTTGGCTGCCCATGAACATTATTCCATTGATGTGTTT
ATTGCCTTTTATATCACAACAAGACTCTTTTTGTACTACCATACTCTGGCTAACACCAGAGCGTATCATC
AGAGTAGGAGAGCGAGGATTTGGTTCCCTATGTTTTCTTTCTTTGAATGCAATGTTAATGGCACAGTACC
TAATGAATATTGTTGGCCATTTTCTAAACCAGCAATAATGAAAAGACTAATTGGATGA

Translation (415 aa):
MAGPSQLCIRRWTTKHVAVWLKDEGFFEYVDILCNKHRLDGITLLTLTEYDLRSPPLEIKVLGDIKRLML
SVRKLQKIHTDVLEEMGYNSDSPMSPMTPFLSALQSADWLCNGEPTHSCDGPIPDLSSDQYQYMNGKNKH
SARRLDPEYWKTILSCVYVFIVFGFTSFIMVIVHERVPDMQTYPPLPDIFLDSVPRIPWAFSMTEVCGVI
LCYIWILVLLLHKHRSILLRRLCSLMGTVFLLRCFTMFVTSLSVPGQHLQCTGKIYGSVWEKLRRAFAIW
SGFGMTLTGVHTCGDYMFSGHTVVLTMLNFFVTEYTPRSWNFLHTLSWVLNLFGIFFILAAHEHYSIDVF
IAFYITTRLFLYYHTLANTRAYHQSRRARIWFPMFSFFECNVNGTVPNEYCWPFSKPAIMKRLIG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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