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Report for CCDS20966.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20966.1 Public Mus musculus 7 Rps19 23 108 98 CCDS HistoryNCBI Gene:20085Re-query CCDS DB by CCDS ID:20966.1Re-query CCDS DB by GeneID:20085See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20966.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108429.7 ENSMUSP00000104067.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108429.7Link to Ensembl Protein Viewer:ENSMUSP00000104067.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108429Re-query CCDS DB by Protein ID:ENSMUSP00000104067
Original member Current member EBI ENSMUST00000108430.9 ENSMUSP00000104068.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108430.9Link to Ensembl Protein Viewer:ENSMUSP00000104068.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000108430Re-query CCDS DB by Protein ID:ENSMUSP00000104068
Original member NCBI NM_001360118.1 NP_001347047.1 Updated not alive Link to Nucleotide Sequence:NM_001360118.1Link to Protein Sequence:NP_001347047.1Re-query CCDS DB by Nucleotide ID:NM_001360118Re-query CCDS DB by Protein ID:NP_001347047
Current member NCBI NM_001360118.2 NP_001347047.1 Accepted alive Link to Nucleotide Sequence:NM_001360118.2Link to Protein Sequence:NP_001347047.1Re-query CCDS DB by Nucleotide ID:NM_001360118Re-query CCDS DB by Protein ID:NP_001347047Link to BLAST:NP_001347047.1
Original member NCBI NM_001360119.1 NP_001347048.1 Updated not alive Link to Nucleotide Sequence:NM_001360119.1Link to Protein Sequence:NP_001347048.1Re-query CCDS DB by Nucleotide ID:NM_001360119Re-query CCDS DB by Protein ID:NP_001347048
Current member NCBI NM_001360119.2 NP_001347048.1 Accepted alive Link to Nucleotide Sequence:NM_001360119.2Link to Protein Sequence:NP_001347048.1Re-query CCDS DB by Nucleotide ID:NM_001360119Re-query CCDS DB by Protein ID:NP_001347048Link to BLAST:NP_001347048.1
Original member Current member NCBI NM_023133.2 NP_075622.1 Accepted alive Link to Nucleotide Sequence:NM_023133.2Link to Protein Sequence:NP_075622.1Re-query CCDS DB by Nucleotide ID:NM_023133Re-query CCDS DB by Protein ID:NP_075622Link to BLAST:NP_075622.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347047.1 145 Q9CZX8 145 100% 0 0
NP_001347048.1 145 Q9CZX8 145 100% 0 0
NP_075622.1 145 Q9CZX8 145 100% 0 0

Chromosomal Locations for CCDS 20966.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 24885136 24885206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24885452 24885552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24888282 24888465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24888907 24888961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 24889741 24889767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (438 nt):
ATGCCCGGAGTTACTGTAAAAGACGTTAACCAGCAGGAGTTCGTCAGAGCTCTGGCAGCCTTCCTCAAAA
AGTCCGGGAAGCTGAAAGTCCCCGAATGGGTGGACACAGTCAAGCTGGCCAAACATAAAGAGCTTGCCCC
ATATGATGAGAACTGGTTCTACACACGAGCTGCTTCCACAGCACGGCACCTGTACCTCCGAGGTGGTGCT
GGGGTTGGTTCCATGACCAAGATCTATGGAGGACGGCAGAGAAACGGTGTCAGACCCAGCCATTTCAGCA
GAGGCTCTAAGAGTGTGGCCCGCCGGGTCCTCCAAGCCCTGGAGGGGCTGAAAATGGTGGAAAAGGACCA
AGATGGGGGCCGCAAGCTGACGCCTCAGGGACAGAGAGACCTGGACAGGATCGCTGGACAGGTGGCAGCT
GCCAACAAGAAGCATTAG

Translation (145 aa):
MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGA
GVGSMTKIYGGRQRNGVRPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVAA
ANKKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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