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Report for CCDS28992.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28992.1 Public Mus musculus 17 Cdkl4 23 108 98 CCDS HistoryNCBI Gene:381113Re-query CCDS DB by CCDS ID:28992.1Re-query CCDS DB by GeneID:381113See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28992.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086545.4 ENSMUSP00000083732.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086545.4Link to Ensembl Protein Viewer:ENSMUSP00000083732.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000086545Re-query CCDS DB by Protein ID:ENSMUSP00000083732
Original member Current member EBI ENSMUST00000234602.1 ENSMUSP00000157063.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234602.1Link to Ensembl Protein Viewer:ENSMUSP00000157063.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234602Re-query CCDS DB by Protein ID:ENSMUSP00000157063
Original member Current member EBI ENSMUST00000234349.1 ENSMUSP00000157316.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234349.1Link to Ensembl Protein Viewer:ENSMUSP00000157316.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234349Re-query CCDS DB by Protein ID:ENSMUSP00000157316
Original member Current member NCBI NM_001033443.4 NP_001028615.1 Accepted alive Link to Nucleotide Sequence:NM_001033443.4Link to Protein Sequence:NP_001028615.1Re-query CCDS DB by Nucleotide ID:NM_001033443Re-query CCDS DB by Protein ID:NP_001028615Link to BLAST:NP_001028615.1
Original member Current member NCBI NM_001360143.1 NP_001347072.1 Accepted alive Link to Nucleotide Sequence:NM_001360143.1Link to Protein Sequence:NP_001347072.1Re-query CCDS DB by Nucleotide ID:NM_001360143Re-query CCDS DB by Protein ID:NP_001347072Link to BLAST:NP_001347072.1
Original member Current member NCBI NM_001360144.1 NP_001347073.1 Accepted alive Link to Nucleotide Sequence:NM_001360144.1Link to Protein Sequence:NP_001347073.1Re-query CCDS DB by Nucleotide ID:NM_001360144Re-query CCDS DB by Protein ID:NP_001347073Link to BLAST:NP_001347073.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028615.1 342 Q3TZA2 342 100% 0 0
NP_001347072.1 342 Q3TZA2 342 100% 0 0
NP_001347073.1 342 Q3TZA2 342 100% 0 0

Chromosomal Locations for CCDS 28992.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 80525285 80525386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80533798 80533932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80535394 80535450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80539504 80539586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80543620 80543817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80547692 80547782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80550826 80550898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80556307 80556428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80560350 80560517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1029 nt):
ATGGAAAAGTATGAAAAGCTAGCTAAGATCGGAGAAGGGTCTTATGGCGTTGTATTCAAGTGCAGAAACA
AATCTTCTGGACAAGTAGTAGCGATCAAAAAATTCGTGGAATCTGAAGATGATCGTGTCGTTAGGAAAAT
AGCCCTGCGGGAAATCCGTATGCTGAAGCAGTTGAAACACCCAAACCTCGTGAACCTCATCGAGGTGTTC
AGAAGAAAGAGAAAGATGCATCTAGTTTTTGAGTACTGTGATCACACACTGTTAAACGAGCTGGAGAGAA
ACCCAAACGGAGTTTCTGATGGAGTGATTAAAAGTGTGCTATGGCAAACCCTTCAAGCCCTTAACTTCTG
TCACAAGCACAATTGTATTCATCGGGATGTAAAACCTGAAAACATCCTAATAACCAAGCAAGGGATGATA
AAGATTTGTGACTTTGGATTTGCACGAATTCTAATTCCAGGAGACGCCTACACAGACTATGTTGCCACCA
GGTGGTACCGAGCCCCCGAACTTCTCGTGGGAGACACGAAGTACGGTTCCTCTGTAGACGTGTGGGCCGT
CGGCTGTGTTTTTGCAGAGCTCCTGACGGGTCAGCCACTCTGGCCGGGAAAATCCGACGTGGACCAGCTT
TACCTGATCATCAGGACGTTGGGGAAGCTGATTCCAAGACACCAGTCTATCTTTAGGAGTAACCAGTTTT
TCCGCGGCATCAGCATACCTGAACCAGAGGACATGGAGACTCTTGAAGAAAAATTCTCAAATGTTCAGCC
TGTGGCTTTAAGTTTCATGAAGGGATGCCTGAAGATGAATCCTGATGAGAGGCTGACCTGTGCCCAGCTG
CTGGACAGTGCCTACTTTGAGTCTTTTCAAGAGGATCAAATGAAAAGAAAAGCCCGCAGTGAGGGGAGAA
GCCGAAGGCGCCAGCAGAATCAACTGCTGCCTCTTATTCCTGGAAGCCACATCTCCCCCACACCTGATGG
AAGGAAACAAGTCGTCCAGTTAAAGTTCGATCATCTTCCAAACATTTAG

Translation (342 aa):
MEKYEKLAKIGEGSYGVVFKCRNKSSGQVVAIKKFVESEDDRVVRKIALREIRMLKQLKHPNLVNLIEVF
RRKRKMHLVFEYCDHTLLNELERNPNGVSDGVIKSVLWQTLQALNFCHKHNCIHRDVKPENILITKQGMI
KICDFGFARILIPGDAYTDYVATRWYRAPELLVGDTKYGSSVDVWAVGCVFAELLTGQPLWPGKSDVDQL
YLIIRTLGKLIPRHQSIFRSNQFFRGISIPEPEDMETLEEKFSNVQPVALSFMKGCLKMNPDERLTCAQL
LDSAYFESFQEDQMKRKARSEGRSRRRQQNQLLPLIPGSHISPTPDGRKQVVQLKFDHLPNI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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