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Report for CCDS38023.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38023.1 Public Mus musculus 19 Mxi1 23 108 98 CCDS HistoryNCBI Gene:17859Re-query CCDS DB by CCDS ID:38023.1Re-query CCDS DB by GeneID:17859See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38023.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025998.14 ENSMUSP00000025998.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025998.14Link to Ensembl Protein Viewer:ENSMUSP00000025998.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000025998Re-query CCDS DB by Protein ID:ENSMUSP00000025998
Original member Current member EBI ENSMUST00000236973.1 ENSMUSP00000157400.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000236973.1Link to Ensembl Protein Viewer:ENSMUSP00000157400.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000236973Re-query CCDS DB by Protein ID:ENSMUSP00000157400
Original member Current member EBI ENSMUST00000235880.1 ENSMUSP00000157790.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000235880.1Link to Ensembl Protein Viewer:ENSMUSP00000157790.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000235880Re-query CCDS DB by Protein ID:ENSMUSP00000157790
Original member Current member EBI ENSMUST00000235201.1 ENSMUSP00000158401.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000235201.1Link to Ensembl Protein Viewer:ENSMUSP00000158401.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000235201Re-query CCDS DB by Protein ID:ENSMUSP00000158401
Original member Current member NCBI NM_001008543.3 NP_001008543.1 Accepted alive Link to Nucleotide Sequence:NM_001008543.3Link to Protein Sequence:NP_001008543.1Re-query CCDS DB by Nucleotide ID:NM_001008543Re-query CCDS DB by Protein ID:NP_001008543Link to BLAST:NP_001008543.1
Original member Current member NCBI NM_001360345.1 NP_001347274.1 Accepted alive Link to Nucleotide Sequence:NM_001360345.1Link to Protein Sequence:NP_001347274.1Re-query CCDS DB by Nucleotide ID:NM_001360345Re-query CCDS DB by Protein ID:NP_001347274Link to BLAST:NP_001347274.1
Original member Current member NCBI NM_001360346.1 NP_001347275.1 Accepted alive Link to Nucleotide Sequence:NM_001360346.1Link to Protein Sequence:NP_001347275.1Re-query CCDS DB by Nucleotide ID:NM_001360346Re-query CCDS DB by Protein ID:NP_001347275Link to BLAST:NP_001347275.1
Original member Current member NCBI NM_001360347.1 NP_001347276.1 Accepted alive Link to Nucleotide Sequence:NM_001360347.1Link to Protein Sequence:NP_001347276.1Re-query CCDS DB by Nucleotide ID:NM_001360347Re-query CCDS DB by Protein ID:NP_001347276Link to BLAST:NP_001347276.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001008543.1 192 P50540-2 192 100% 0 0
NP_001347274.1 192 P50540-2 192 100% 0 0
NP_001347275.1 192 P50540-2 192 100% 0 0
NP_001347276.1 192 P50540-2 192 100% 0 0

Chromosomal Locations for CCDS 38023.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 53331386 53331483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53346451 53346480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53369542 53369656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53370190 53370361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 53371573 53371736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (579 nt):
ATGCCGAGCCCCCGGCTACAGCACTCGAAGCCCCCACGGAGGTTGAGCCGGGCACAGAAACACAGCAGTG
GAAGCAGCAACACCAGCACTGCCAACAGATCTACACACAATGAGTTGGAAAAGAACCGACGAGCTCACCT
GCGCCTGTGTTTAGAACGCTTGAAAGTTCTGATCCCGCTGGGCCCAGACTGCACCAGGCACACAACACTC
GGTTTGCTCAACAAAGCCAAAGCACACATCAAGAAACTTGAAGAAGCGGAGAGGAAGAGCCAGCACCAGC
TAGAGAACTTGGAACGAGAACAGAGGTTTTTAAAGCGGCGACTGGAACAGCTGCAGGGGCCTCAGGAGAT
GGAGCGGATACGAATGGACAGCATTGGATCAACCATCTCTTCAGATCGCTCGGATTCAGAGCGAGAGGAG
ATTGAAGTGGATGTGGAAAGCACAGAGTTCTCCCATGGAGAAGCAGACAGTGTCAGTACCACCAGCATCA
GTGACCTTGACGACCACAGCAGCCTGCAGAGTGTCGGGAGTGACGAGGGTTATTCCAGTGCCAGTGTCAA
ACTCTCCTTCGCGTCCTAG

Translation (192 aa):
MPSPRLQHSKPPRRLSRAQKHSSGSSNTSTANRSTHNELEKNRRAHLRLCLERLKVLIPLGPDCTRHTTL
GLLNKAKAHIKKLEEAERKSQHQLENLEREQRFLKRRLEQLQGPQEMERIRMDSIGSTISSDRSDSEREE
IEVDVESTEFSHGEADSVSTTSISDLDDHSSLQSVGSDEGYSSASVKLSFAS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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