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Report for CCDS26599.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26599.1 Public Mus musculus 13 Prxl2c 23 108 98 CCDS HistoryNCBI Gene:66129Re-query CCDS DB by CCDS ID:26599.1Re-query CCDS DB by GeneID:66129See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26599.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000222570.1 ENSMUSP00000152323.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000222570.1Link to Ensembl Protein Viewer:ENSMUSP00000152323.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000222570Re-query CCDS DB by Protein ID:ENSMUSP00000152323
Original member Current member NCBI NM_025370.3 NP_079646.1 Accepted alive Link to Nucleotide Sequence:NM_025370.3Link to Protein Sequence:NP_079646.1Re-query CCDS DB by Nucleotide ID:NM_025370Re-query CCDS DB by Protein ID:NP_079646Link to BLAST:NP_079646.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079646.1 226 Q9D1A0 226 100% 0 0

Chromosomal Locations for CCDS 26599.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 64292101 64292228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64297255 64297386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64308822 64308927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64309093 64309146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64312267 64312335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64312493 64312684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (681 nt):
ATGGCCGCGCCGGTGACGCGGCAGGTCAGCGGCTGCGCAGGCCGGGTCCCGAGCCCGGCTGGCTCGGTCA
CAGAGCGCGGGCAGCCGCTAGCGGCCGCCGTAGCGGAGCTGCCCGTGCTGGACGCGTCTGGGAGACGGGT
GACGTTCGGAGCGCTGTTCCGAGAGCGGCGAGCCGTGGTGGTGTTTGTGAGGCATTTCTTGTGTTACGTC
TGTAAAGAATATGTCGAAGATCTGGCCAAAATCCCCAAGAGCGTCCTCCGAGAAGCAGATGTCACCCTCA
TAGTGATTGGACAATCATCATACCATCATATTGAGCCTTTCTGCAAACTGACTGGATATTCTCATGAAAT
CTATGTTGATCCTGAGAGAGAAATTTACAAAAGATTGGGAATGAAAAGAGGTGAAGAAATTTCCTCCTCT
GGACAGAGCCCCCACATAAAGTCCAACCTGCTCTCGGGAAGCCTTCAGAGCCTGTGGCGGGCAGTCACTG
GCCCACTTTTTGATTTCCAAGGAGACCCAGCTCAGCAAGGAGGAACCCTCATTTTAGGTCCAGGTAACAA
CATCCACTTTGTGCACCGAGACAGGAATAGGTTGGATCACAAACCCATAAACTCTGTTTTACAGCTTGTG
GGGGTTCAGCCTGTGAACTTCATGAGCAGACCTACAGTCATCCACGTGTGA

Translation (226 aa):
MAAPVTRQVSGCAGRVPSPAGSVTERGQPLAAAVAELPVLDASGRRVTFGALFRERRAVVVFVRHFLCYV
CKEYVEDLAKIPKSVLREADVTLIVIGQSSYHHIEPFCKLTGYSHEIYVDPEREIYKRLGMKRGEEISSS
GQSPHIKSNLLSGSLQSLWRAVTGPLFDFQGDPAQQGGTLILGPGNNIHFVHRDRNRLDHKPINSVLQLV
GVQPVNFMSRPTVIHV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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