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Report for CCDS38198.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38198.1 Public Mus musculus 2 Nop10 23 108 98 CCDS HistoryNCBI Gene:66181Re-query CCDS DB by CCDS ID:38198.1Re-query CCDS DB by GeneID:66181See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38198.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028553.3 ENSMUSP00000028553.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028553.3Link to Ensembl Protein Viewer:ENSMUSP00000028553.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000028553Re-query CCDS DB by Protein ID:ENSMUSP00000028553
Original member Current member NCBI NM_025403.4 NP_079679.1 Accepted alive Link to Nucleotide Sequence:NM_025403.4Link to Protein Sequence:NP_079679.1Re-query CCDS DB by Nucleotide ID:NM_025403Re-query CCDS DB by Protein ID:NP_079679Link to BLAST:NP_079679.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079679.1 64 Q9CQS2 64 100% 0 0

Chromosomal Locations for CCDS 38198.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 112262024 112262077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112262313 112262453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (195 nt):
ATGTTTCTCCAATATTACCTCAACGAGCAGGGCGATCGCGTTTATACGCTGAAGAAATTTGACCCTATGG
GACAACAGACTTGCTCCGCCCATCCTGCTCGGTTCTCCCCAGATGACAAATATTCAAGACACCGAATCAC
CATCAAGAAACGCTTCAAGGTGCTCATGACCCAGCAACCGCGTCCTGTCCTCTGA

Translation (64 aa):
MFLQYYLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQPRPVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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