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Report for CCDS37773.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37773.1 Public Mus musculus 18 Zmat2 23 108 98 CCDS HistoryNCBI Gene:66492Re-query CCDS DB by CCDS ID:37773.1Re-query CCDS DB by GeneID:66492See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 37773.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001419.9 ENSMUSP00000001419.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001419.9Link to Ensembl Protein Viewer:ENSMUSP00000001419.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000001419Re-query CCDS DB by Protein ID:ENSMUSP00000001419
Original member Current member NCBI NM_025594.3 NP_079870.1 Accepted alive Link to Nucleotide Sequence:NM_025594.3Link to Protein Sequence:NP_079870.1Re-query CCDS DB by Nucleotide ID:NM_025594Re-query CCDS DB by Protein ID:NP_079870Link to BLAST:NP_079870.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079870.1 199 Q9CPW7 199 100% 0 0

Chromosomal Locations for CCDS 37773.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 36793942 36793959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36794297 36794390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36795041 36795164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36796037 36796110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36796499 36796644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36797879 36798022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (600 nt):
ATGGCGTCTGGCAGCGGGACAAAAAACTTGGACTTTCGCCGAAAGTGGGACAAAGATGAATATGAGAAGC
TCGCGGAGAAGAGACTCACAGAGGAGAGAGAGAAGAAGGATGGGAAACCAGTGCAGCCTGTCAAGCGGGA
GCTTCTGCGGCACAGGGATTACAAGGTGGACCTGGAGTCCAAGCTGGGGAAGACGATTGTTATCACCAAG
ACGACCCCACAGTCTGAAATGGGAGGCTACTACTGCAATGTCTGTGACTGTGTGGTGAAAGACTCCATTA
ACTTCCTGGACCACATTAATGGAAAGAAACATCAGCGAAACCTGGGTATGTCCATGCGCGTGGAACGCTC
CACTCTGGATCAGGTAAAGAAGCGTTTTGAGGTGAACAAGAAGAAGATGGAAGAGAAGCAGAAAGATTAT
GATTTTGAGGAAAGGATGAAGGAGCTCAGAGAAGAGGAGGAAAAGGCTAAAGCATACAAAAAAGAGAAAC
AGAAGGAGAAGAAAAGGAGAGCCGAGGAGGACTTGACTTTTGAGGAGGATGATGAAATGGCAGCTGTGAT
GGGTTTCTCTGGCTTTGGTTCCACCAAGAAGAGTTACTGA

Translation (199 aa):
MASGSGTKNLDFRRKWDKDEYEKLAEKRLTEEREKKDGKPVQPVKRELLRHRDYKVDLESKLGKTIVITK
TTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLDQVKKRFEVNKKKMEEKQKDY
DFEERMKELREEEEKAKAYKKEKQKEKKRRAEEDLTFEEDDEMAAVMGFSGFGSTKKSY


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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