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Report for CCDS16567.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16567.1 Public Mus musculus 2 Dph6 23 108 98 CCDS HistoryNCBI Gene:66632Re-query CCDS DB by CCDS ID:16567.1Re-query CCDS DB by GeneID:66632See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16567.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102542.9 ENSMUSP00000099601.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102542.9Link to Ensembl Protein Viewer:ENSMUSP00000099601.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102542Re-query CCDS DB by Protein ID:ENSMUSP00000099601
Original member Current member NCBI NM_025675.5 NP_079951.1 Accepted alive Link to Nucleotide Sequence:NM_025675.5Link to Protein Sequence:NP_079951.1Re-query CCDS DB by Nucleotide ID:NM_025675Re-query CCDS DB by Protein ID:NP_079951Link to BLAST:NP_079951.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079951.1 267 Q9CQ28-1 267 100% 0 0

Chromosomal Locations for CCDS 16567.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 114518239 114518292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114519712 114519799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114523044 114523138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114535525 114535586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114567920 114568038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114569477 114569550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114644721 114644914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114647741 114647835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114654831 114654853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (804 nt):
ATGAGGGTCGCGGCCCTGATCAGTGGTGGGAAGGACAGCTGTTACAACATGATGCAGTGCATTGCTGAGG
GGCATCAAATTGTTGCATTAGCAAATCTAAGACCAGATGAAAACCAAGTGGAGTCAGATGAACTGGATAG
CTATATGTATCAGACAGTGGGTCACCATGCCATTGACTTGTATGCTGAAGCAATGGCGCTGCCCCTGTAT
CGCAGAGCCATCAGAGGAAGGAGCTTGGAGACAGGAAGAGTTTATACGCAATGTGAAGGTGACGAGGTTG
AAGATCTCTATGAACTGTTGAAACTTGTTAAGGAAAAAGAAGAAATCGAAGGGGTATCAGTAGGTGCTAT
ACTCTCTGACTATCAACGTGGACGAGTAGAAAATGTATGTAAACGACTCAATCTCCAGCCTTTAGCTTAT
CTTTGGCAAAGAAACCAGGAAGATTTGCTCCGAGAGATGATAGCTTCTAATATCAAGGCCATTATCATCA
AAGTAGCAGCTTTGGGCTTAGATCCTGATAAGCATCTTGGGAAAACCCTGGTTGAAATGGAGCCTTATCT
TTTAGAGCTTTCTAAGAAGTACGGTGTCCACGTGTGTGGAGAAGGTGGAGAGTATGAGACATTCACGTTG
GACTGCCCTCTATTCAAGAAGAAGATTGTTGTGGACTCTTCAGAAGCAGTCATGCACTCAGCGGATGCAT
TCGCACCTGTGGCTTATCTGCGGCTCTCCCGGCTGCACTTGGAAGAGAAAGTGTCGTCAGTACCTGCGGA
TGATGAAACAGCTAACTCTATACACAGCTCTTAA

Translation (267 aa):
MRVAALISGGKDSCYNMMQCIAEGHQIVALANLRPDENQVESDELDSYMYQTVGHHAIDLYAEAMALPLY
RRAIRGRSLETGRVYTQCEGDEVEDLYELLKLVKEKEEIEGVSVGAILSDYQRGRVENVCKRLNLQPLAY
LWQRNQEDLLREMIASNIKAIIIKVAALGLDPDKHLGKTLVEMEPYLLELSKKYGVHVCGEGGEYETFTL
DCPLFKKKIVVDSSEAVMHSADAFAPVAYLRLSRLHLEEKVSSVPADDETANSIHSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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