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Report for CCDS27927.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27927.1 Public Mus musculus 16 Nudt16l1 23 108 98 CCDS HistoryNCBI Gene:66911Re-query CCDS DB by CCDS ID:27927.1Re-query CCDS DB by GeneID:66911See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27927.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000230931.1 ENSMUSP00000155142.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000230931.1Link to Ensembl Protein Viewer:ENSMUSP00000155142.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000230931Re-query CCDS DB by Protein ID:ENSMUSP00000155142
Original member Current member NCBI NM_025839.4 NP_080115.1 Accepted alive Link to Nucleotide Sequence:NM_025839.4Link to Protein Sequence:NP_080115.1Re-query CCDS DB by Nucleotide ID:NM_025839Re-query CCDS DB by Protein ID:NP_080115Link to BLAST:NP_080115.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080115.1 211 Q8VHN8-1 211 100% 0 0

Chromosomal Locations for CCDS 27927.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 4939141 4939293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4939378 4939638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4940196 4940417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (636 nt):
ATGTCGACCACGACGGTTCCGGAGCTGAAACAGATCAGTCGGGAGGAAGCAATGCGCTTGGGGCCCGGCT
GGAGTCATTCATGCCACGCCATGCTATACGCCGCCAACCCCGGGCAGCTTTTCGGACGTATCCCCATGCG
TTTCTCAGTGCTGATGCAGATGCGCTTCGACGGGCTGCTAGGCTTTCCCGGGGGTTTCGTGGACCGGCGC
TTCTGGTCGCTGGAGGATGGCTTGAATCGGGTGCTGGGCCTGGGCCTGGGCGGCCTACGCCTTACCGAAG
CTGATTACCTGAGTTCACACCTGACTGAGGGTCCACACCGTGTGGTGGCACATCTGTACGCACGGCAGCT
GACATTGGAACAACTGCATGCTGTGGAGATCAGCGCTGTGCACTCACGGGACCACGGTCTGGAGGTCCTG
GGCCTTGTACGGGTCCCACTGTACACACAGAAGGATCGAGTAGGCGGCTTTCCTAACTTTCTGAGCAACG
CCTTCGTCAGCACTGCCAAATATCAACTTCTATTTGCCCTTAAGGTACTCAACATGATGCCCTCGGAAAA
GCTGGCCGAGGCCTTGGCCTCAGCAACAGAGAAGCAGAAGAAGGCTCTAGAAAAGCTGCTCCCGCCCTCA
TCCTGA

Translation (211 aa):
MSTTTVPELKQISREEAMRLGPGWSHSCHAMLYAANPGQLFGRIPMRFSVLMQMRFDGLLGFPGGFVDRR
FWSLEDGLNRVLGLGLGGLRLTEADYLSSHLTEGPHRVVAHLYARQLTLEQLHAVEISAVHSRDHGLEVL
GLVRVPLYTQKDRVGGFPNFLSNAFVSTAKYQLLFALKVLNMMPSEKLAEALASATEKQKKALEKLLPPS
S


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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