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Report for CCDS38481.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38481.1 Public Mus musculus 3 Pmf1 23 108 98 CCDS HistoryNCBI Gene:67037Re-query CCDS DB by CCDS ID:38481.1Re-query CCDS DB by GeneID:67037See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38481.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056370.12 ENSMUSP00000062420.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056370.12Link to Ensembl Protein Viewer:ENSMUSP00000062420.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000056370Re-query CCDS DB by Protein ID:ENSMUSP00000062420
Original member NCBI NM_025928.4 NP_080204.1 Updated not alive Link to Nucleotide Sequence:NM_025928.4Link to Protein Sequence:NP_080204.1Re-query CCDS DB by Nucleotide ID:NM_025928Re-query CCDS DB by Protein ID:NP_080204
Current member NCBI NM_025928.5 NP_080204.1 Accepted alive Link to Nucleotide Sequence:NM_025928.5Link to Protein Sequence:NP_080204.1Re-query CCDS DB by Nucleotide ID:NM_025928Re-query CCDS DB by Protein ID:NP_080204Link to BLAST:NP_080204.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080204.1 202 Q9CPV5-1 202 100% 0 0

Chromosomal Locations for CCDS 38481.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 88394517 88394570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88395905 88396100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88399135 88399235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88399711 88399816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88410156 88410307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (609 nt):
ATGGCTGAGGTGAGCCGAGATAGCGAGGCTGCGGAAAGGGGGCCTGAGGGCTCCTCTCCGGAAGCTGTGC
CAGGGGACGCGACCATCCCCAGGGTGAAACTCCTGGACGCCATAGTAGACACTTTCCTCCAGAAGCTAGT
CGCCGACAGGAGCTACGAGAGGTTCACCACCTGCTACAAACACTTCCACCAGTTGAACCCTGAGGTGACG
CAGAGGATCTATGACAAGTTTGTGGCTCAGTTGCAGACATCCATCCGCGAGGAAATCTCAGAAATCAAAG
AGGAGGGGAACCTAGAAGCTGTCCTGAACTCCCTGGATAAGATCATAGAAGAAGGCAGAGAGCGCGGAGA
GCCAGCCTGGCGACCCAGTGGAATCCCAGAGAAAGACCTGTGTAGTGTCATGGCACCCTACTTCCTGAAG
CAACAGGATACCCTGTGTCATCAAGTACGGAAACAGGAAGCCAAGAACCAGGAACTGGCCGACGCTGTCC
TGGCCGGGCGCAGGCAGGTGGAGGAGCTGCAGCAGCAGGTTCGGGCCCTCCAGCAAACATGGCAGGCTCT
ACACAGAGAGCAGAGGGAGCTGCTGTCAGTGCTGAGGGCGCCTGAGTGA

Translation (202 aa):
MAEVSRDSEAAERGPEGSSPEAVPGDATIPRVKLLDAIVDTFLQKLVADRSYERFTTCYKHFHQLNPEVT
QRIYDKFVAQLQTSIREEISEIKEEGNLEAVLNSLDKIIEEGRERGEPAWRPSGIPEKDLCSVMAPYFLK
QQDTLCHQVRKQEAKNQELADAVLAGRRQVEELQQQVRALQQTWQALHREQRELLSVLRAPE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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