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Report for CCDS18487.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18487.1 Public Mus musculus 4 Pdzk1ip1 23 108 98 CCDS HistoryNCBI Gene:67182Re-query CCDS DB by CCDS ID:18487.1Re-query CCDS DB by GeneID:67182See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18487.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030488.2 ENSMUSP00000030488.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030488.2Link to Ensembl Protein Viewer:ENSMUSP00000030488.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000030488Re-query CCDS DB by Protein ID:ENSMUSP00000030488
Original member Current member EBI ENSMUST00000106548.8 ENSMUSP00000102158.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106548.8Link to Ensembl Protein Viewer:ENSMUSP00000102158.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106548Re-query CCDS DB by Protein ID:ENSMUSP00000102158
Original member Current member EBI ENSMUST00000177647.7 ENSMUSP00000136049.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177647.7Link to Ensembl Protein Viewer:ENSMUSP00000136049.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177647Re-query CCDS DB by Protein ID:ENSMUSP00000136049
Original member Current member NCBI NM_001164558.1 NP_001158030.1 Accepted alive Link to Nucleotide Sequence:NM_001164558.1Link to Protein Sequence:NP_001158030.1Re-query CCDS DB by Nucleotide ID:NM_001164558Re-query CCDS DB by Protein ID:NP_001158030Link to BLAST:NP_001158030.1
Original member Current member NCBI NM_026018.3 NP_080294.1 Accepted alive Link to Nucleotide Sequence:NM_026018.3Link to Protein Sequence:NP_080294.1Re-query CCDS DB by Nucleotide ID:NM_026018Re-query CCDS DB by Protein ID:NP_080294Link to BLAST:NP_080294.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158030.1 114 Q9CQH0 114 100% 0 0
NP_080294.1 114 Q9CQH0 114 100% 0 0

Chromosomal Locations for CCDS 18487.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 115089146 115089212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115091142 115091250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115092921 115093016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115093476 115093548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (345 nt):
ATGTTGGCCTTCAGTCTGCTCGTGCTGGGTCTGCTCGCGGAAGTGGCACCTGCCAGCTGTCAACAAGGTC
TAGGAAACCTTCAGCCCTGGATGCAAGGCCTCATTGCTGTCGCTGTGTTCTTGGTCCTTGTTGCAATCGT
CTTCGCCGTCAACCACTTCTGGTGCCAGGAGGAGCCGGAGCCTGGGAGCACAGTGATGATCATTGGAAAC
AAGGCAGATGGGGTCCTGGTGGGAATGGATGGCAGATACTCCTCAATGGCATCTGGTTTTAGGTCCAGCG
AGCACAAGAATGCCTACGAGAATGTTCTGGAGGAAGAGGGCAGGGTCCGCAGCACACCCATGTGA

Translation (114 aa):
MLAFSLLVLGLLAEVAPASCQQGLGNLQPWMQGLIAVAVFLVLVAIVFAVNHFWCQEEPEPGSTVMIIGN
KADGVLVGMDGRYSSMASGFRSSEHKNAYENVLEEEGRVRSTPM


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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