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Report for CCDS16648.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16648.1 Public Mus musculus 2 Mfap1a 23 108 98 CCDS HistoryNCBI Gene:67532Re-query CCDS DB by CCDS ID:16648.1Re-query CCDS DB by GeneID:67532See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16648.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089926.5 ENSMUSP00000087372.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089926.5Link to Ensembl Protein Viewer:ENSMUSP00000087372.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000089926Re-query CCDS DB by Protein ID:ENSMUSP00000087372
Original member Current member NCBI NM_026220.4 NP_080496.1 Accepted alive Link to Nucleotide Sequence:NM_026220.4Link to Protein Sequence:NP_080496.1Re-query CCDS DB by Nucleotide ID:NM_026220Re-query CCDS DB by Protein ID:NP_080496Link to BLAST:NP_080496.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080496.1 439 C0HKD8 439 100% 0 0

Chromosomal Locations for CCDS 16648.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 121494665 121494847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121494930 121495019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121497329 121497488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121499286 121499446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121499538 121499646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121502332 121502869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121506463 121506541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1320 nt):
ATGTCGGTCCCAAGCGCACTCATGAAGCAGCCGCCCATCCAGTCTACGGCTGGGGCCGTCCCAGTTCGAA
ACGAGAAAGGTGAGATCTCAATGGAAAAGGTGAAGGTGAAACGATATGTGTCCGGAAAGAGACCAGATTA
TGCCCCTATGGAGTCCTCAGATGAAGAGGATGAAGAATTTCAGTTCATTAAGAAAGCTAAGGAACAAGAA
GCAGAGCCTGAGGAACAGGAGGAGGACTCATCCAGTGACCCCCGACTTCGGCGGTTACAGAACCGCATCA
GTGAAGATGTGGAAGAGCGATTGGCTCGACACAGAAAGATCGTGGAACCTGAAGTAGTGGGAGAGAGCGA
CTCAGAAGTAGAAGGGGATGCTTGGCGCCTGGAACGAGAAGACAGCAGTGAGGAAGAGGAGGAAGAGATT
GACGATGAAGAAATTGAGCGGCGCCGTGGCATGATGCGTCAGCGAGCACAGGAGAGGAAAAATGAAGAGA
TGGAAGTCATGGAGGTGGAAGATGAAGGGCGCTCTGGGGAGGAGTCTGAGTCAGAGTCTGAGTATGAGGA
GTACACAGACAGTGAGGATGAAATGGAGCCTCGACTTAAGCCTGTCTTCATTCGAAAGAAGGATCGGGTG
ACAGTTCAAGAACGAGAAGCTGAAGCATTGAAACAGAAGGAACTGGAACAAGAAGCAAAACGCATGGCTG
AGGAGCGGCGCAAGTACACCCTCAAGATTGTAGAAGAAGAGACCAAGAAAGAGCTAGAGGAGAACAAGCG
GTCTCTTGCTGCCCTGGATGCGCTCAATACTGATGATGAAAATGACGAGGAAGAATACGAGGCATGGAAA
GTCCGCGAGCTCAAAAGAATCAAGAGGGAGAGAGAAGACCGAGAAGCGCTTGAAAAGGAGAAAGCAGAAA
TTGAACGCATGAGAAACCTGACTGAGGAAGAAAGGCGGGCAGAACTTCGGGCAAATGGCAAAGTCATTAC
CAACAAAGCTGTTAAAGGCAAATACAAGTTTCTACAGAAGTATTATCACCGAGGTGCCTTCTTCATGGAT
GAGGATGAAGAAGTCTACAAGAGAGACTTTAGTGCACCTACTCTTGAGGACCATTTCAACAAAACCATTC
TTCCTAAAGTCATGCAGGTCAAGAATTTTGGACGGTCTGGTCGCACCAAGTACACCCACCTTGTGGATCA
AGATACCACTTCCTTTGACTCTGCATGGGGCCAAGAGAGTGCCCAGAACACAAAATTCTTTAAACAAAAG
GCAGCAGGGGTACGAGATGTATTTGAGCGACCATCTGCCAAGAAGAGGAAAACCACCTAG

Translation (439 aa):
MSVPSALMKQPPIQSTAGAVPVRNEKGEISMEKVKVKRYVSGKRPDYAPMESSDEEDEEFQFIKKAKEQE
AEPEEQEEDSSSDPRLRRLQNRISEDVEERLARHRKIVEPEVVGESDSEVEGDAWRLEREDSSEEEEEEI
DDEEIERRRGMMRQRAQERKNEEMEVMEVEDEGRSGEESESESEYEEYTDSEDEMEPRLKPVFIRKKDRV
TVQEREAEALKQKELEQEAKRMAEERRKYTLKIVEEETKKELEENKRSLAALDALNTDDENDEEEYEAWK
VRELKRIKREREDREALEKEKAEIERMRNLTEEERRAELRANGKVITNKAVKGKYKFLQKYYHRGAFFMD
EDEEVYKRDFSAPTLEDHFNKTILPKVMQVKNFGRSGRTKYTHLVDQDTTSFDSAWGQESAQNTKFFKQK
AAGVRDVFERPSAKKRKTT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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