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Report for CCDS29414.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29414.1 Public Mus musculus 19 Cdk2ap2 23 108 98 CCDS HistoryNCBI Gene:52004Re-query CCDS DB by CCDS ID:29414.1Re-query CCDS DB by GeneID:52004See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29414.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025779.10 ENSMUSP00000025779.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025779.10Link to Ensembl Protein Viewer:ENSMUSP00000025779.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000025779Re-query CCDS DB by Protein ID:ENSMUSP00000025779
Original member Current member NCBI NM_026373.4 NP_080649.1 Accepted alive Link to Nucleotide Sequence:NM_026373.4Link to Protein Sequence:NP_080649.1Re-query CCDS DB by Nucleotide ID:NM_026373Re-query CCDS DB by Protein ID:NP_080649Link to BLAST:NP_080649.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080649.1 127 Q9CPY4 127 100% 0 0

Chromosomal Locations for CCDS 29414.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 4097426 4097507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4097817 4097917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4098005 4098137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4098498 4098565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (384 nt):
ATGTCCTACAAACCTATCGCGCCCGCCCCCAGCAGTACCCCGGGCTCCAGCACCCCCGGGCCAGGCACCC
CGGTCCCTACAGCCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACC
GCTGTTTAACGACTTTGGTCCGCCCTCCATGGGGTATGTACAGGCGATGAAGCCACCTGGTTCCCAGGGC
TCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATG
CTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAGGCATCATCCACGCTCGGGCACTAGTCAGAGAGTG
CTTGGCAGAGACAGAACGCAATGCCCGCACGTAA

Translation (127 aa):
MSYKPIAPAPSSTPGSSTPGPGTPVPTAGSVPSPSGSVPGAAAPFRPLFNDFGPPSMGYVQAMKPPGSQG
SQSTYTDLLSVIEEMGKEIRPTYAGSKSAMERLKRGIIHARALVRECLAETERNART


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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