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Report for CCDS17563.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17563.1 Public Mus musculus 3 Lce1b 23 108 98 CCDS HistoryNCBI Gene:68720Re-query CCDS DB by CCDS ID:17563.1Re-query CCDS DB by GeneID:68720See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17563.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029531.3 ENSMUSP00000029531.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029531.3Link to Ensembl Protein Viewer:ENSMUSP00000029531.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000029531Re-query CCDS DB by Protein ID:ENSMUSP00000029531
Original member Current member NCBI NM_026822.1 NP_081098.1 Accepted alive Link to Nucleotide Sequence:NM_026822.1Link to Protein Sequence:NP_081098.1Re-query CCDS DB by Nucleotide ID:NM_026822Re-query CCDS DB by Protein ID:NP_081098Link to BLAST:NP_081098.1

Chromosomal Locations for CCDS 17563.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 92655811 92656224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (414 nt):
ATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAGCCCCCTCCCAAGTGCACCCCCAAGTGCCCTCCCAAAT
GCCAGACCCCAAAATGCCCTCCAAAGTGCCCCCCAAAATGTCCTCCCAAGTGCCCCCCTGTGTCTTCCTG
CTGTAGCCTGGGTTCTGGGGGTTGTTGTGGCTCCAGCTCTGGGGGCTGCTGTAGCTCTGGTGGTTGCTGC
AGTTCTGGGGGTGGAGGCTGCTGCCTGAGCCACCACAGACCTCGCAGATCCCTCCGTCGCCATCGCCACA
GCTCTGGATGCTGTAGCAGTGGTGGCAGCAGTGGCTGCTGTGGCAGCAGTGGTGGTAGCAGTGGCTGCTG
TGGCAGCAGTGGTGGCAGCAGTGGCTGCTGTGGCAGTAGCCAGCAGTCTGGGGGCTGCTGCTGA

Translation (137 aa):
MSCQQNQQQCQPPPKCTPKCPPKCQTPKCPPKCPPKCPPKCPPVSSCCSLGSGGCCGSSSGGCCSSGGCC
SSGGGGCCLSHHRPRRSLRRHRHSSGCCSSGGSSGCCGSSGGSSGCCGSSGGSSGCCGSSQQSGGCC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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