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Report for CCDS38112.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38112.1 Public Mus musculus 2 Lhx6 23 108 98 CCDS HistoryNCBI Gene:16874Re-query CCDS DB by CCDS ID:38112.1Re-query CCDS DB by GeneID:16874See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38112.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112960.7 ENSMUSP00000108584.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112960.7Link to Ensembl Protein Viewer:ENSMUSP00000108584.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112960Re-query CCDS DB by Protein ID:ENSMUSP00000108584
Original member Current member NCBI NM_008500.2 NP_032526.2 Accepted alive Link to Nucleotide Sequence:NM_008500.2Link to Protein Sequence:NP_032526.2Re-query CCDS DB by Nucleotide ID:NM_008500Re-query CCDS DB by Protein ID:NP_032526Link to BLAST:NP_032526.2

Chromosomal Locations for CCDS 38112.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 36084055 36084075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36087368 36087471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36090962 36091136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36091320 36091415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36091606 36091706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36094213 36094433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36102858 36102979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36103346 36103528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36103894 36103965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 36105124 36105207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1179 nt):
ATGTACTGGAAGCATGAGAGCGCCGCCCCGGCGCTGCCCGAGGGCTGCCGGTTGCCGGCGGAGGGCGGCC
CCACCACCGACCAGGTGATGGCCCAGCCAGGGTCCGGCTGCAAAGCGACCACCCGCTGTCTCGAAGGGAC
CGCTCCGCCTGCCATGGCTCAGTCAGACGCAGAGGCCTTGGCAGGCGCTCTGGACAAGGACGAAGGTAGA
GCCTCCCCATGTACGCCCAGCACACCGTCTGTCTGCTCGCCGCCCTCTGCTGCCTCTTCCGTGCCGTCTG
CCGGCAAGAATATCTGCTCCAGTTGCGGTCTGGAGATCCTGGACCGGTATCTGCTCAAGGTCAACAACCT
CATCTGGCACGTGCGGTGCCTCGAGTGCTCCGTGTGTCGCACATCGCTGAGGCAGCAGAATAGCTGCTAC
ATCAAGAACAAGGAGATCTACTGCAAGATGGACTACTTCAGCCGATTTGGAACCAAGTGCGCCCGGTGCG
GCAGACAAATCTATGCCAGTGACTGGGTGCGGCGCGCACGCGGCAATGCCTACCACCTGGCATGTTTCGC
CTGCTTTTCCTGCAAGCGCCAGCTATCCACCGGTGAGGAATTCGGCCTCGTTGAGGAGAAGGTGCTTTGC
CGCATCCATTACGACACCATGATCGAGAACCTCAAGAGGGCCGCCGAGAACGGGAACGGTCTCACGCTGG
AGGGGGCAGTGCCCTCGGAACAGGACAGTCAGCCCAAGCCAGCCAAGCGCGCGCGGACGTCCTTCACCGC
AGAGCAATTGCAGGTTATGCAGGCGCAGTTCGCGCAGGACAACAACCCGGACGCGCAGACGCTGCAGAAG
CTAGCGGACATGACGGGCCTCAGTCGCAGGGTCATCCAGGTGTGGTTTCAAAACTGCCGAGCGCGTCATA
AAAAGCATACACCGCAGCACCCAGTGCCGCCCTCTGGGGCACCCCCGACCCGCCTCCCTTCTGCCCTGTC
CGACGACATCCACTACTCTCCGTTCAGCAGCCCAGAGAGGGCGCGCATGGTCACCTTGCACGGCTACATT
GAGAGTCAGGTACAGTGCGGGCAGGTGCACTGCCGACTGCCTTACACCGCGCCCCCTGTCCACCTCAAAG
CTGATTTGGACGGCCCGCTCTCCAGCCGGGGTGAGAAGGTCATCCTTTTTCAGTACTAA

Translation (392 aa):
MYWKHESAAPALPEGCRLPAEGGPTTDQVMAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDKDEGR
ASPCTPSTPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCY
IKNKEIYCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLC
RIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQK
LADMTGLSRRVIQVWFQNCRARHKKHTPQHPVPPSGAPPTRLPSALSDDIHYSPFSSPERARMVTLHGYI
ESQVQCGQVHCRLPYTAPPVHLKADLDGPLSSRGEKVILFQY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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