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Report for CCDS40053.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40053.1 Public Mus musculus 7 Or51f1e 23 108 98 CCDS HistoryNCBI Gene:259091Re-query CCDS DB by CCDS ID:40053.1Re-query CCDS DB by GeneID:259091See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40053.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000104881.4 ENSMUSP00000100476.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000104881.4Link to Ensembl Protein Viewer:ENSMUSP00000100476.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000104881Re-query CCDS DB by Protein ID:ENSMUSP00000100476
Original member Current member NCBI NM_147087.2 NP_667298.2 Accepted alive Link to Nucleotide Sequence:NM_147087.2Link to Protein Sequence:NP_667298.2Re-query CCDS DB by Nucleotide ID:NM_147087Re-query CCDS DB by Protein ID:NP_667298Link to BLAST:NP_667298.2

Chromosomal Locations for CCDS 40053.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 103097743 103098699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGCTACAAATGCAGGACAACACAGAATTCCTAAGCAACTTCACATCGAAATTATCAACCTTCTTGTTGA
CTGGCATTCCTGGACTAGAGTCTGCTCACGGCTGGATCTCCATCCCTTTCTGTTGTCTTTATGCCACTGC
CCTCTCTGGCAACAGCATGATCCTCTTCATCATTGTGACCCAGCATAGCCTGCATGAACCTATGTACTAT
TTCCTCTCCGTGCTCTCTGCCACTGACCTGGGTTTGACTTTTTCTACAATGTCAACCACCTTGAGAATCC
TGTGGTTTCAGGCAAATGAAATCAGTCTAGATTTATGCATTGTTCAGATGTTTTTTCTCCATGGGTTCAC
ATGTACAGAATCTGGAGTGTTAGTGGCTATGGCTTTTGATCGTTATGTAGCGATCTGCAAACCTCTTAGA
TATACTATGATTCTTACTAATTCTAGAATCATTCAGATAGGTTTCCTAGTGATAATGCGCACTCTACTTT
TAATAATTCCACTACTTCTGCTCCTTAAGCCTGTCTCTTTCTGTAAAAGGAATACCCTCTCCCACTCCTA
CTGTTATCCAGATGTGATTAAGTTAGCATGTTCAGACACTCGGGCAAATAACATCTGTGGACTAGTTGAT
CTCATTCTGACGACAGGGCTAGATATTCCCTGCATTGTCTTATCTTATATTCTGATCATTCGTTCTGTCC
TCAATATTGCCTCATCTGAAGAACGACACAAGGCCTTCAGCACTTGTGTGTCCCACATTGCAGCAGTTGC
AGTTTTCTACATCCCTATGTTTAGCCTGTCTCTGGTGCATCGCTATGGTCGGTCAGTGCCCAAGGTAGTC
CATACAATGATGGCCAATGTTTATCTTCTTTTGCCCCCTGTGCTCAACCCCATCATCTACAGTGTGAAAA
CAAAGCAAATAAGAAAGGCTATTCTTAGTTTGCTCTTTGCAAAATGA

Translation (318 aa):
MLQMQDNTEFLSNFTSKLSTFLLTGIPGLESAHGWISIPFCCLYATALSGNSMILFIIVTQHSLHEPMYY
FLSVLSATDLGLTFSTMSTTLRILWFQANEISLDLCIVQMFFLHGFTCTESGVLVAMAFDRYVAICKPLR
YTMILTNSRIIQIGFLVIMRTLLLIIPLLLLLKPVSFCKRNTLSHSYCYPDVIKLACSDTRANNICGLVD
LILTTGLDIPCIVLSYILIIRSVLNIASSEERHKAFSTCVSHIAAVAVFYIPMFSLSLVHRYGRSVPKVV
HTMMANVYLLLPPVLNPIIYSVKTKQIRKAILSLLFAK


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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