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Report for CCDS40238.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40238.1 Public Mus musculus 8 Erich1 23 108 98 CCDS HistoryNCBI Gene:234086Re-query CCDS DB by CCDS ID:40238.1Re-query CCDS DB by GeneID:234086See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40238.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110813.4 ENSMUSP00000106436.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110813.4Link to Ensembl Protein Viewer:ENSMUSP00000106436.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000110813Re-query CCDS DB by Protein ID:ENSMUSP00000106436
Original member Current member NCBI NM_001034862.2 NP_001030034.2 Accepted alive Link to Nucleotide Sequence:NM_001034862.2Link to Protein Sequence:NP_001030034.2Re-query CCDS DB by Nucleotide ID:NM_001034862Re-query CCDS DB by Protein ID:NP_001030034Link to BLAST:NP_001030034.2

Chromosomal Locations for CCDS 40238.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 14028080 14028153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 14030593 14030784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 14033336 14033764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 14064205 14064339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 14078770 14078916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 14090241 14090262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (999 nt):
ATGTCTTCTCTTCGGAAGCAGGTGTTTACCGAGAAAGTGCTGAAGAGGCTTTTCCCTAATGTTTCAAATG
GTCAAGAAAAGGGGACTCCCCAGCCTCCAGCCTCCGAGACACCATCCAAGGATGTGACCCCTGAAGCAGT
ACAGCAGAAGGATGCTCACAGTCTGACAGATGGTGACATTAAGATCCAGCCTGAACGTCGGCTCTACACT
GTGAGTTTGCCTCCTCAAGGGTATATCCCCTGTTTGCCCGAACCGACCAGCTGTGCGGATTCTGAGAATG
CCTCCAGCGGTGGTGACACAGAAGATCTGGAACTTCCTGAGCAACCAAAAAGACGAAGAATTAGAAGACA
CAAATCAAAGAAGAATATTACAAACCTCAGTGACGTTATTGTAAGGCAAACCGAACTAGAGACCCAACAA
AAGAAAATGCACCCACAGCATCCAGACCCCCCTGCCCTGAGCAAAAATAAAAGAAGAAAACTAAAGACGA
AGCTGCGGCTTAGGAGGAAGAGAGAAGCCGGCCTAGCCACGAAGGCCTCTGGGGTCAGCTTCACCTACCA
GCCCGAGAGCAGCGAGGAGGCAGAGGCTGAAGATGATGTGGGAGGAGAGGAGGAAGGTGATCCGGAGCGC
TCGGTCACAGACATCACCCAGGAAGACATTGAGCTGGCCAGCAGCAGGGCGGAGGGCGTACTGAGTTTTC
TGAAGTCAACACAAGAACTTTATTTCTACGATGATACTCCCAGAGACGATCCAGCTGTGTGCCCAGAGAC
CGCTGAAGAGCTGCTTCACCTCCTTGAGTCCGGAGGCATGCCTCCCGCGGACGTGCTCATCCTGGACCAC
ATGAAAACCCTGCTGCTTCTGCAGGACACTGAGAGACTGAAGAGCGCCCTGGAGATGTTCCCAGAGCACT
GTACGATGCCTCCAGACCATGCCAAGATAATCACAGCCTTCTTTAATTATTGGATCACGCAGATTCTTCC
TGAAAAAAGCAGCGAATAA

Translation (332 aa):
MSSLRKQVFTEKVLKRLFPNVSNGQEKGTPQPPASETPSKDVTPEAVQQKDAHSLTDGDIKIQPERRLYT
VSLPPQGYIPCLPEPTSCADSENASSGGDTEDLELPEQPKRRRIRRHKSKKNITNLSDVIVRQTELETQQ
KKMHPQHPDPPALSKNKRRKLKTKLRLRRKREAGLATKASGVSFTYQPESSEEAEAEDDVGGEEEGDPER
SVTDITQEDIELASSRAEGVLSFLKSTQELYFYDDTPRDDPAVCPETAEELLHLLESGGMPPADVLILDH
MKTLLLLQDTERLKSALEMFPEHCTMPPDHAKIITAFFNYWITQILPEKSSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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