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Report for CCDS88571.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88571.1 Public Mus musculus 14 Slc4a7 23 108 98 CCDS HistoryNCBI Gene:218756Re-query CCDS DB by CCDS ID:88571.1Re-query CCDS DB by GeneID:218756See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88571.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000225979.2 ENSMUSP00000153690.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000225979.2Link to Ensembl Protein Viewer:ENSMUSP00000153690.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000225979Re-query CCDS DB by Protein ID:ENSMUSP00000153690
Original member Current member NCBI NM_001360513.1 NP_001347442.1 Accepted alive Link to Nucleotide Sequence:NM_001360513.1Link to Protein Sequence:NP_001347442.1Re-query CCDS DB by Nucleotide ID:NM_001360513Re-query CCDS DB by Protein ID:NP_001347442Link to BLAST:NP_001347442.1

Chromosomal Locations for CCDS 88571.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 14703233 14703280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14729202 14729283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14733722 14733868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14737369 14737507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14738184 14738344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14739725 14739874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14745968 14746083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14747733 14747792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14748466 14748623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14750435 14750522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14757285 14757431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14760235 14760341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14762348 14762522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14765577 14765710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14766740 14766985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14771209 14771314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14772536 14772697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14773237 14773350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14774891 14775052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14775177 14775428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14778826 14778894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14782049 14782222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14786292 14786423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14791067 14791164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14793950 14794057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14796077 14796158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3417 nt):
ATGGAGGCAGACGGGGCCGGCGAGCAGATGAGACCGCTACTCACGCGGGGTCCAGATGAAGAAGCTGTTG
TGGATCTTGGCAAAACTAGCTCAACTGTGAACACCAAGTTTGAAAAAGAAGAATTAGAAAGTCATCGAGC
TGTATATGTTGGTGTTCATGTACCATTTAGTAAAGAGAGTCGTCGGCGTCACAAGCATCGAGGGCACAAA
CATCACCACCGGAGAAGAAAAGACAAAGACTCAGATAAAGAAGATGGACGGGAATCTCCTTCTTATGACA
CGCCATCGCAGAGGGTGCAGTTCATCCTCGGGACTGAAGACGACGATGAGGAGCACATTCCCCACGACCT
CTTCACAGAGATGGATGAGCTCTGCTACAGAGACGGAGAAGAGTACGAGTGGAAGGAGACGGCCAGGTGG
CTGAAATTTGAAGAGGATGTTGAAGATGGTGGTGACCGATGGAGTAAACCCTATGTGGCAACTCTGTCTC
TACACAGTCTCTTTGAATTGAGGAGTTGTATCCTGAATGGAACAGTTATGCTGGATATGAGAGCAAGCAC
TCTTGATGAAATTGCAGATATGGTGTTAGACAACATGATAGCATCTGGCCAGTTAGATGACTCCATAAGG
GAGAACGTCAGAGAAGCTCTTCTGAAGAGACATCATCATCAAAATGAGAAAAGGTTCACGAGTCGGATTC
CCCTGGTTCGATCCTTTGCAGATATAGGGATTTTGGCTTCTCCACAGTCTGCTCCTGGAAACTTGGACAA
TAGTAAAAGTGGTGAAATGAAAGGTAACGGAAGTGGAGGAAGCAGAGAAAATAGTACTGTTGACTTTAGC
AAGGAGTCAGCCTCCTGGCACTGTAGTTGTGGCACACTGGGTGTGGGACTCAAGAAGCCGGCTGTTGACA
TGAATTTCATGAGGAAAATTCCTACAGGAGCTGAGGCATCCAATGTTTTGGTAGGAGAAGTGGACTTCTT
GGAGAGACCGATCATTGCATTTGTGAGACTGGCTCCTGCAGTTCTCCTCTCAGGGTTGACTGAGGTCCCT
GTGCCCACTAGGTTTTTGTTTCTGTTACTGGGCCCAGCAGGGAAAGCCCCACAGTACCATGAAATTGGCA
GATCCATAGCAACTCTCATGACAGATGAGATTTTTCATGATGTGGCTTATAAAGCAAAAGATCGTAATGA
CCTCCTATCTGGAATTGATGAATTCTTAGATCAAGTAACTGTTCTTCCTCCAGGAGAGTGGGATCCTTCC
ATACGCATAGAGCCTCCAAAAAGTGTTCCTTCTCAGGAAAAAAGGAAGATTCCTGTGTTTCCTAATGGAT
CTGCTGCAATGTCTGTTGACCCTCCCAAGGAGGATGATCACCATGCTGGGCCTGAGCTGCAGAGGACTGG
ACGGCTTTTTGGTGGTTTGATACTTGACATCAAAAGGAAAGCACCTTTTTTCTTGAGTGACTTCAAGGAT
GCATTAAGTCTGCAGTGCCTGGCCTCGATTCTTTTCCTATACTGTGCCTGTATGTCTCCTGTAATCACTT
TTGGAGGGCTGCTTGGAGAAGCTACAGAAGGCAGAATAAGTGCAATAGAGTCTCTTTTTGGAGCGTCATT
AACTGGGATTGCCTATTCATTGTTTGCTGGGCAACCTCTAACAATACTGGGGAGCACAGGTCCAGTCCTA
GTGTTTGAAAAAATTTTATTTAAATTCTGTAGAGATTATCACCTTTCCTATCTATCATTAAGAACCAGTA
TTGGTCTGTGGACATCTTTCTTGTGCATTGTATTGGTCGCAACAGATGCAAGCAGCCTTGTTTGTTACAT
TACTCGGTTCACAGAAGAAGCTTTTGCGGCTCTCATTTGTATCATATTCATCTATGAAGCTCTGGAGAAG
CTCTTTCACTTAGGAGAAATATATGCATTTAATATGCACAACAACTTGGATGAATTGACCAGTTACACAT
GTGTATGTGCTGAGCCATCTAACCCTAGCAACGAAACTCTAGAACTGTGGAAGAGGAAGAATATAACAGC
ATACAGTGTTTCCTGGGGCAACCTTACTGTTTCTGAGTGTAAGACCTTCCATGGTATGTTTGTGGGATCA
GCTTGTGGGCCTCATGGACCTTATGTTCCTGACGTGCTCTTCTGGTGTGTCGTCTTGTTTTTCACGACGT
TCTTTCTGTCTTCATTCCTCAAGCAGTTTAAGACCAAGAGATATTTTCCTACCAAGGTACGATCAACAAT
CAGTGACTTTGCTGTATTTCTCACAATAGTAATAATGGTTGCAATTGACTACCTTGTAGGAATTCCATCT
CCTAAACTTCATGTGCCTGAAAAGTTCGAGCCTACTGATCCAAGTAGGGGCTGGATCATAAGCCCTTTGG
GAGATAACCCTTGGTGGACCTTACTAATTGCAGCAGTTCCAGCTCTCCTTTGTACTATTCTCATCTTTAT
GGACCAGCAGATCACAGCTGTAATCATCAACAGAAAAGAACACAAACTCAAGAAAGGAGCTGGCTACCAC
CTTGACTTGCTCATGGTTGGTGTCATGTTGGGAGTCTGCTCTATCATGGGCTTGCCGTGGTTTGTGGCTG
CGACAGTGTTGTCTATAAGTCATGTCAACAGCTTGAAAGTGGAGTCTGAGTGTTCTGCTCCAGGGGAGCA
GCCCAAGTTTCTGGGAATTCGTGAACAGCGGGTTACAGGGCTGATGATTTTTATCCTGATGGGCCTCTCT
GTGTTCATGACTTCAGTATTAAAGTTTATCCCAATGCCAGTTTTGTACGGTGTTTTTCTTTATATGGGAG
TTTCATCGTTGAAAGGAATTCAGTTTTTTGACCGTATCAAGTTATTTGGAATGCCTGCCAAGCACCAGCC
CGACCTAATCTACCTCCGCTATGTCCCCCTGTGGAAGGTGCACGTGTTCACGGTCGTCCAGCTGACCTGC
CTAGTCCTGCTGTGGGTGATCAAAGCCTCTGCTGCTGCAGTAGTTTTTCCCATGATGGTTCTTGCATTAG
TCTTTGTGCGCAAGCTCATGGATCTCTGTTTCACAAAGAGAGAACTCAGTTGGCTTGATGACCTCATGCC
AGAAAGTAAGAAAAAGAAAGAAGATGACAAAAAGAAAAAAGAGAAAGAGGAAGCTGAACGGATGCTTCAG
GATGATGAGGACACTGTGCACCTCCCATTCGAAAGAGGGAGTCTCCTGCAGATTCCAGTGAAAACTCTAA
AATATAGTATTGACCCTTCAGTTGTTAACATATCAGATGAAATGGCCAAAACTGCCCAGTGGAAGGCACT
TTCCATGAATACTGAGAATGCCAAAGTAACGAGACCTAACACGAGCCCTGAAAAGCCTGTGAGTGTGACA
ATAAATTTCGAAGATGAACCGTCAAAAAAATACATGGATGCTGAAACTTCATTGTAA

Translation (1138 aa):
MEADGAGEQMRPLLTRGPDEEAVVDLGKTSSTVNTKFEKEELESHRAVYVGVHVPFSKESRRRHKHRGHK
HHHRRRKDKDSDKEDGRESPSYDTPSQRVQFILGTEDDDEEHIPHDLFTEMDELCYRDGEEYEWKETARW
LKFEEDVEDGGDRWSKPYVATLSLHSLFELRSCILNGTVMLDMRASTLDEIADMVLDNMIASGQLDDSIR
ENVREALLKRHHHQNEKRFTSRIPLVRSFADIGILASPQSAPGNLDNSKSGEMKGNGSGGSRENSTVDFS
KESASWHCSCGTLGVGLKKPAVDMNFMRKIPTGAEASNVLVGEVDFLERPIIAFVRLAPAVLLSGLTEVP
VPTRFLFLLLGPAGKAPQYHEIGRSIATLMTDEIFHDVAYKAKDRNDLLSGIDEFLDQVTVLPPGEWDPS
IRIEPPKSVPSQEKRKIPVFPNGSAAMSVDPPKEDDHHAGPELQRTGRLFGGLILDIKRKAPFFLSDFKD
ALSLQCLASILFLYCACMSPVITFGGLLGEATEGRISAIESLFGASLTGIAYSLFAGQPLTILGSTGPVL
VFEKILFKFCRDYHLSYLSLRTSIGLWTSFLCIVLVATDASSLVCYITRFTEEAFAALICIIFIYEALEK
LFHLGEIYAFNMHNNLDELTSYTCVCAEPSNPSNETLELWKRKNITAYSVSWGNLTVSECKTFHGMFVGS
ACGPHGPYVPDVLFWCVVLFFTTFFLSSFLKQFKTKRYFPTKVRSTISDFAVFLTIVIMVAIDYLVGIPS
PKLHVPEKFEPTDPSRGWIISPLGDNPWWTLLIAAVPALLCTILIFMDQQITAVIINRKEHKLKKGAGYH
LDLLMVGVMLGVCSIMGLPWFVAATVLSISHVNSLKVESECSAPGEQPKFLGIREQRVTGLMIFILMGLS
VFMTSVLKFIPMPVLYGVFLYMGVSSLKGIQFFDRIKLFGMPAKHQPDLIYLRYVPLWKVHVFTVVQLTC
LVLLWVIKASAAAVVFPMMVLALVFVRKLMDLCFTKRELSWLDDLMPESKKKKEDDKKKKEKEEAERMLQ
DDEDTVHLPFERGSLLQIPVKTLKYSIDPSVVNISDEMAKTAQWKALSMNTENAKVTRPNTSPEKPVSVT
INFEDEPSKKYMDAETSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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