NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS88578.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88578.1 Public Mus musculus 14 Slc4a7 23 108 98 CCDS HistoryNCBI Gene:218756Re-query CCDS DB by CCDS ID:88578.1Re-query CCDS DB by GeneID:218756See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88578.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000224049.2 ENSMUSP00000153093.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000224049.2Link to Ensembl Protein Viewer:ENSMUSP00000153093.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000224049Re-query CCDS DB by Protein ID:ENSMUSP00000153093
Original member Current member NCBI NM_001360520.1 NP_001347449.1 Accepted alive Link to Nucleotide Sequence:NM_001360520.1Link to Protein Sequence:NP_001347449.1Re-query CCDS DB by Nucleotide ID:NM_001360520Re-query CCDS DB by Protein ID:NP_001347449Link to BLAST:NP_001347449.1

Chromosomal Locations for CCDS 88578.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 14718858 14718890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14729202 14729283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14733722 14733868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14737369 14737507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14738184 14738344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14739725 14739874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14745968 14746083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14748466 14748623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14750435 14750522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14757285 14757431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14760235 14760341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14762348 14762522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14765577 14765710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14766740 14766985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14771209 14771314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14772536 14772697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14773237 14773350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14774891 14775052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14775177 14775428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14778826 14778894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14782049 14782222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14786292 14786423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14791067 14791164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14793950 14794057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 14796077 14796158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3342 nt):
ATGGAAAGATTTCAGCTGGCGAGGAAGTTGCATGGTCCAGATGAAGAAGCTGTTGTGGATCTTGGCAAAA
CTAGCTCAACTGTGAACACCAAGTTTGAAAAAGAAGAATTAGAAAGTCATCGAGCTGTATATGTTGGTGT
TCATGTACCATTTAGTAAAGAGAGTCGTCGGCGTCACAAGCATCGAGGGCACAAACATCACCACCGGAGA
AGAAAAGACAAAGACTCAGATAAAGAAGATGGACGGGAATCTCCTTCTTATGACACGCCATCGCAGAGGG
TGCAGTTCATCCTCGGGACTGAAGACGACGATGAGGAGCACATTCCCCACGACCTCTTCACAGAGATGGA
TGAGCTCTGCTACAGAGACGGAGAAGAGTACGAGTGGAAGGAGACGGCCAGGTGGCTGAAATTTGAAGAG
GATGTTGAAGATGGTGGTGACCGATGGAGTAAACCCTATGTGGCAACTCTGTCTCTACACAGTCTCTTTG
AATTGAGGAGTTGTATCCTGAATGGAACAGTTATGCTGGATATGAGAGCAAGCACTCTTGATGAAATTGC
AGATATGGTGTTAGACAACATGATAGCATCTGGCCAGTTAGATGACTCCATAAGGGAGAACGTCAGAGAA
GCTCTTCTGAAGAGACATCATCATCAAAATGAGAAAAGGTTCACGAGTCGGATTCCCCTGGTTCGATCCT
TTGCAGATATAGGGATTTTGGCTTCTCCACAGTCTGCTCCTGGAAACTTGGACAATAGTAAAAGTGGTGA
AATGAAAGGTAACGGAAGTGGAGGAAGCAGAGAAAATAGTACTGTTGACTTTAGCAAGGTTGACATGAAT
TTCATGAGGAAAATTCCTACAGGAGCTGAGGCATCCAATGTTTTGGTAGGAGAAGTGGACTTCTTGGAGA
GACCGATCATTGCATTTGTGAGACTGGCTCCTGCAGTTCTCCTCTCAGGGTTGACTGAGGTCCCTGTGCC
CACTAGGTTTTTGTTTCTGTTACTGGGCCCAGCAGGGAAAGCCCCACAGTACCATGAAATTGGCAGATCC
ATAGCAACTCTCATGACAGATGAGATTTTTCATGATGTGGCTTATAAAGCAAAAGATCGTAATGACCTCC
TATCTGGAATTGATGAATTCTTAGATCAAGTAACTGTTCTTCCTCCAGGAGAGTGGGATCCTTCCATACG
CATAGAGCCTCCAAAAAGTGTTCCTTCTCAGGAAAAAAGGAAGATTCCTGTGTTTCCTAATGGATCTGCT
GCAATGTCTGTTGACCCTCCCAAGGAGGATGATCACCATGCTGGGCCTGAGCTGCAGAGGACTGGACGGC
TTTTTGGTGGTTTGATACTTGACATCAAAAGGAAAGCACCTTTTTTCTTGAGTGACTTCAAGGATGCATT
AAGTCTGCAGTGCCTGGCCTCGATTCTTTTCCTATACTGTGCCTGTATGTCTCCTGTAATCACTTTTGGA
GGGCTGCTTGGAGAAGCTACAGAAGGCAGAATAAGTGCAATAGAGTCTCTTTTTGGAGCGTCATTAACTG
GGATTGCCTATTCATTGTTTGCTGGGCAACCTCTAACAATACTGGGGAGCACAGGTCCAGTCCTAGTGTT
TGAAAAAATTTTATTTAAATTCTGTAGAGATTATCACCTTTCCTATCTATCATTAAGAACCAGTATTGGT
CTGTGGACATCTTTCTTGTGCATTGTATTGGTCGCAACAGATGCAAGCAGCCTTGTTTGTTACATTACTC
GGTTCACAGAAGAAGCTTTTGCGGCTCTCATTTGTATCATATTCATCTATGAAGCTCTGGAGAAGCTCTT
TCACTTAGGAGAAATATATGCATTTAATATGCACAACAACTTGGATGAATTGACCAGTTACACATGTGTA
TGTGCTGAGCCATCTAACCCTAGCAACGAAACTCTAGAACTGTGGAAGAGGAAGAATATAACAGCATACA
GTGTTTCCTGGGGCAACCTTACTGTTTCTGAGTGTAAGACCTTCCATGGTATGTTTGTGGGATCAGCTTG
TGGGCCTCATGGACCTTATGTTCCTGACGTGCTCTTCTGGTGTGTCGTCTTGTTTTTCACGACGTTCTTT
CTGTCTTCATTCCTCAAGCAGTTTAAGACCAAGAGATATTTTCCTACCAAGGTACGATCAACAATCAGTG
ACTTTGCTGTATTTCTCACAATAGTAATAATGGTTGCAATTGACTACCTTGTAGGAATTCCATCTCCTAA
ACTTCATGTGCCTGAAAAGTTCGAGCCTACTGATCCAAGTAGGGGCTGGATCATAAGCCCTTTGGGAGAT
AACCCTTGGTGGACCTTACTAATTGCAGCAGTTCCAGCTCTCCTTTGTACTATTCTCATCTTTATGGACC
AGCAGATCACAGCTGTAATCATCAACAGAAAAGAACACAAACTCAAGAAAGGAGCTGGCTACCACCTTGA
CTTGCTCATGGTTGGTGTCATGTTGGGAGTCTGCTCTATCATGGGCTTGCCGTGGTTTGTGGCTGCGACA
GTGTTGTCTATAAGTCATGTCAACAGCTTGAAAGTGGAGTCTGAGTGTTCTGCTCCAGGGGAGCAGCCCA
AGTTTCTGGGAATTCGTGAACAGCGGGTTACAGGGCTGATGATTTTTATCCTGATGGGCCTCTCTGTGTT
CATGACTTCAGTATTAAAGTTTATCCCAATGCCAGTTTTGTACGGTGTTTTTCTTTATATGGGAGTTTCA
TCGTTGAAAGGAATTCAGTTTTTTGACCGTATCAAGTTATTTGGAATGCCTGCCAAGCACCAGCCCGACC
TAATCTACCTCCGCTATGTCCCCCTGTGGAAGGTGCACGTGTTCACGGTCGTCCAGCTGACCTGCCTAGT
CCTGCTGTGGGTGATCAAAGCCTCTGCTGCTGCAGTAGTTTTTCCCATGATGGTTCTTGCATTAGTCTTT
GTGCGCAAGCTCATGGATCTCTGTTTCACAAAGAGAGAACTCAGTTGGCTTGATGACCTCATGCCAGAAA
GTAAGAAAAAGAAAGAAGATGACAAAAAGAAAAAAGAGAAAGAGGAAGCTGAACGGATGCTTCAGGATGA
TGAGGACACTGTGCACCTCCCATTCGAAAGAGGGAGTCTCCTGCAGATTCCAGTGAAAACTCTAAAATAT
AGTATTGACCCTTCAGTTGTTAACATATCAGATGAAATGGCCAAAACTGCCCAGTGGAAGGCACTTTCCA
TGAATACTGAGAATGCCAAAGTAACGAGACCTAACACGAGCCCTGAAAAGCCTGTGAGTGTGACAATAAA
TTTCGAAGATGAACCGTCAAAAAAATACATGGATGCTGAAACTTCATTGTAA

Translation (1113 aa):
MERFQLARKLHGPDEEAVVDLGKTSSTVNTKFEKEELESHRAVYVGVHVPFSKESRRRHKHRGHKHHHRR
RKDKDSDKEDGRESPSYDTPSQRVQFILGTEDDDEEHIPHDLFTEMDELCYRDGEEYEWKETARWLKFEE
DVEDGGDRWSKPYVATLSLHSLFELRSCILNGTVMLDMRASTLDEIADMVLDNMIASGQLDDSIRENVRE
ALLKRHHHQNEKRFTSRIPLVRSFADIGILASPQSAPGNLDNSKSGEMKGNGSGGSRENSTVDFSKVDMN
FMRKIPTGAEASNVLVGEVDFLERPIIAFVRLAPAVLLSGLTEVPVPTRFLFLLLGPAGKAPQYHEIGRS
IATLMTDEIFHDVAYKAKDRNDLLSGIDEFLDQVTVLPPGEWDPSIRIEPPKSVPSQEKRKIPVFPNGSA
AMSVDPPKEDDHHAGPELQRTGRLFGGLILDIKRKAPFFLSDFKDALSLQCLASILFLYCACMSPVITFG
GLLGEATEGRISAIESLFGASLTGIAYSLFAGQPLTILGSTGPVLVFEKILFKFCRDYHLSYLSLRTSIG
LWTSFLCIVLVATDASSLVCYITRFTEEAFAALICIIFIYEALEKLFHLGEIYAFNMHNNLDELTSYTCV
CAEPSNPSNETLELWKRKNITAYSVSWGNLTVSECKTFHGMFVGSACGPHGPYVPDVLFWCVVLFFTTFF
LSSFLKQFKTKRYFPTKVRSTISDFAVFLTIVIMVAIDYLVGIPSPKLHVPEKFEPTDPSRGWIISPLGD
NPWWTLLIAAVPALLCTILIFMDQQITAVIINRKEHKLKKGAGYHLDLLMVGVMLGVCSIMGLPWFVAAT
VLSISHVNSLKVESECSAPGEQPKFLGIREQRVTGLMIFILMGLSVFMTSVLKFIPMPVLYGVFLYMGVS
SLKGIQFFDRIKLFGMPAKHQPDLIYLRYVPLWKVHVFTVVQLTCLVLLWVIKASAAAVVFPMMVLALVF
VRKLMDLCFTKRELSWLDDLMPESKKKKEDDKKKKEKEEAERMLQDDEDTVHLPFERGSLLQIPVKTLKY
SIDPSVVNISDEMAKTAQWKALSMNTENAKVTRPNTSPEKPVSVTINFEDEPSKKYMDAETSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH