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Report for CCDS21445.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21445.1 Public Mus musculus 7 Hikeshi 23 108 98 CCDS HistoryNCBI Gene:67669Re-query CCDS DB by CCDS ID:21445.1Re-query CCDS DB by GeneID:67669See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21445.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000153470.8 ENSMUSP00000119806.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000153470.8Link to Ensembl Protein Viewer:ENSMUSP00000119806.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000153470Re-query CCDS DB by Protein ID:ENSMUSP00000119806
Original member NCBI NM_026304.3 NP_080580.1 Updated not alive Link to Nucleotide Sequence:NM_026304.3Link to Protein Sequence:NP_080580.1Re-query CCDS DB by Nucleotide ID:NM_026304Re-query CCDS DB by Protein ID:NP_080580
Current member NCBI NM_026304.4 NP_080580.1 Accepted alive Link to Nucleotide Sequence:NM_026304.4Link to Protein Sequence:NP_080580.1Re-query CCDS DB by Nucleotide ID:NM_026304Re-query CCDS DB by Protein ID:NP_080580Link to BLAST:NP_080580.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080580.1 197 Q9DD02-1 197 100% 0 0

Chromosomal Locations for CCDS 21445.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 89918953 89919007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 89920073 89920191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 89923564 89923715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 89935727 89935964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 89940969 89940998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (594 nt):
ATGTTTGGCTGCCTGGTGGCGGGGAGGCTGGTGCAAACAGCTGCACAGCAAGTGGCAGAGGATAAATTTG
TTTTTGACTTGCCTGATTATGAAAATATCAACCATGTTGTGGTTTTTATGCTGGGAACAATCCCATTTCC
TGAGGGCATGGGAGGATCTGTCTACTTTTCCTATCCTGATTCAAATGGGGTGCCAGTGTGGCAGCTCCTA
GGATTTGTCACGAATGGAAAGCCAAGTGCCATCTTCAAAATATCAGGTCTTAAATCTGGGGAAGGAAGCC
AGCACCCATTTGGAGCCATGAATATTGTGCGAACCCCATCTGTTGCCCAGATTGGCATCTCGGTGGAATT
GTTGGACAGTCTGGCTCAGCAGACTCCTGTAGGCAGTGCTGCCGTGTCCTCCGTTGACTCCTTTACGCAG
TTCACACAGAAGATGTTGGACAACTTCTACAATTTTGCTTCATCATTTGCTCTCTCTCAGGCCCAGATGA
CACCAAATCCATCAGAAATGTTCATCCCAGCAAATGTGGTTCTGAAATGGTATGAAAACTTTCAAAGACG
ACTAGCACAGAACCCCCTCTTTTGGAAAACATAA

Translation (197 aa):
MFGCLVAGRLVQTAAQQVAEDKFVFDLPDYENINHVVVFMLGTIPFPEGMGGSVYFSYPDSNGVPVWQLL
GFVTNGKPSAIFKISGLKSGEGSQHPFGAMNIVRTPSVAQIGISVELLDSLAQQTPVGSAAVSSVDSFTQ
FTQKMLDNFYNFASSFALSQAQMTPNPSEMFIPANVVLKWYENFQRRLAQNPLFWKT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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