NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS36602.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36602.1 Public Mus musculus 13 Psma2 23 108 98 CCDS HistoryNCBI Gene:19166Re-query CCDS DB by CCDS ID:36602.1Re-query CCDS DB by GeneID:19166See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36602.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170836.3 ENSMUSP00000129767.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170836.3Link to Ensembl Protein Viewer:ENSMUSP00000129767.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000170836Re-query CCDS DB by Protein ID:ENSMUSP00000129767
Original member Current member NCBI NM_008944.2 NP_032970.2 Accepted alive Link to Nucleotide Sequence:NM_008944.2Link to Protein Sequence:NP_032970.2Re-query CCDS DB by Nucleotide ID:NM_008944Re-query CCDS DB by Protein ID:NP_032970Link to BLAST:NP_032970.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032970.2 234 P49722 234 100% 0 0

Chromosomal Locations for CCDS 36602.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 14613275 14613315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 14616012 14616088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 14616737 14616869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 14619302 14619424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 14620725 14620806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 14623598 14623671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 14625203 14625260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 14625349 14625465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (705 nt):
ATGGCAGAGCGCGGTTACAGCTTCTCGCTGACTACATTCAGCCCATCTGGTAAGCTTGTCCAGATTGAAT
ATGCCTTGGCTGCGGTAGCTGGAGGGGCCCCGTCAGTGGGGATTAAAGCTGCAAATGGCGTAGTATTAGC
AACCGAGAAAAAGCAGAAATCCATCCTGTATGATGAAAGGAGTGTTCACAAGGTGGAGCCCATTACCAAG
CACATCGGTTTGGTGTACAGTGGCATGGGCCCCGATTACAGAGTACTTGTACACAGAGCTCGGAAACTTG
CTCAGCAATACTACCTTGTTTACCAAGAACCCATTCCCACAGCCCAGCTGGTACAGAGAGTAGCCTCTGT
GATGCAGGAGTACACGCAGTCAGGTGGTGTTCGTCCATTTGGTGTTTCTTTACTCATTTGTGGGTGGAAT
GAGGGACGACCATATTTATTTCAGTCAGATCCATCTGGAGCTTACTTTGCCTGGAAGGCCACAGCAATGG
GAAAGAACTATGTGAACGGGAAAACTTTCCTTGAGAAAAGATATAATGAAGACCTAGAACTGGAGGATGC
CATTCATACAGCCATCTTAACCCTAAAGGAAAGCTTTGAAGGGCAGATGACAGAAGATAACATAGAAGTT
GGGATCTGCAATGAGGCTGGCTTTAGGAGGCTCACTCCAACTGAAGTGAGGGATTACCTGGCTGCCATAG
CGTGA

Translation (234 aa):
MAERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITK
HIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWN
EGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEV
GICNEAGFRRLTPTEVRDYLAAIA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH