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Report for CCDS39125.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39125.1 Public Mus musculus 5 Tmprss11f 23 108 98 CCDS HistoryNCBI Gene:243083Re-query CCDS DB by CCDS ID:39125.1Re-query CCDS DB by GeneID:243083See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39125.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000116553.8 ENSMUSP00000112252.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116553.8Link to Ensembl Protein Viewer:ENSMUSP00000112252.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000116553Re-query CCDS DB by Protein ID:ENSMUSP00000112252
Original member Current member NCBI NM_178730.3 NP_848845.1 Accepted alive Link to Nucleotide Sequence:NM_178730.3Link to Protein Sequence:NP_848845.1Re-query CCDS DB by Nucleotide ID:NM_178730Re-query CCDS DB by Protein ID:NP_848845Link to BLAST:NP_848845.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848845.1 439 Q8BHM9 439 100% 0 0

Chromosomal Locations for CCDS 39125.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 86524012 86524170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86528160 86528302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86529891 86530150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86533635 86533836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86535201 86535239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86537990 86538153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86539695 86539762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86544779 86544897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86556892 86557046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86591410 86591420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1320 nt):
ATGATGTACGCACCAGTTGAATTTTCACAAACAGCATACCCACGAATCGAATATCAAAGAAGACAACAAC
AATTTTGGGACCCTATACGACTAGCTCTGTTCACATTGGCAATTGTCGCAATCGTAGGAATCACAATTGG
CATCGTCACTCATTTTGTTGTTGAAGATGACAAGTCATTTTATTACCTCGCCTCTTTTCAAGTCACAAGC
ATCAAATACAGAGAAAATTATGGAATCAGGTCATCAAGGGAGTTTATAGAAAGAAGTCATCAGATCGAGA
GAATGATGTCCAGGATATTCCGACGTTCTTCTGGAGTGGGTAGATTTATCAAGTCCCATGTTATCAAGAT
AAGTCCAGATGAACAAGGAGTGAACATTCTTATAGTGCTCATGTTTCGATACCCATCTACTGATAGTGCC
GAGCGAATCAAGAAAAGAATTGAAAGGACTTTTTATCAAAGTCTGAAGATCAAACAGTTGCCTTTGACTA
TTAGTATGCCATCATTCAGCCTCACACCCATTGACAGCAAAAAGATGAGAAATCTTCTCAATAGCCGATG
TGGGATAAGAATGTCATCTTCAAACATCCCATTACCAGCATCCTCTTCTACTGAACGCATTGTCCAAGGG
AGGGAAACAGCTATGGAAGGAGAGTGGCCATGGCAGGCTAGCCTCCAGCTCATTGGGGCTGGCCATCAGT
GTGGAGCCACACTCATCAGCAACACATGGCTGCTCACAGCAGCTCATTGCTTCTGGAAAAACAGAGACCC
AACTAAATGGATTGTCACCTTTGGTACAACTATAACACCACCTTTAGTCAAACGAAGTGTTGGGAAGATT
ATCATCCATGAAGAGTACCACAGAGATACCAATGAAAACGACATTGCTCTAGCTCAGCTAACCACCCGCG
TCGAGTTTTCAAATGTGGTTCAGAGAGTCTGCCTCCCAGATTCATCTATGAAATTGCCACCGAAAACAAG
TGTTTTTGTCACAGGATTTGGGTCTATTGTAGATGATGGGCCTACACAAAATAAACTCCGGCAGGCCAGG
GTGGAAACCATAGGTTCTGATGTGTGCAACAGAAAGGATGTATACGATGGCTTGATAACTCCAGGGATGC
TGTGCGCTGGATTCATGGAAGGAAAAATAGATGCATGTAAGGGTGATTCTGGTGGACCTTTGGTTTATGA
CAATCGGGACATCTGGTACATTGTGGGCATAGTAAGTTGGGGACAATCTTGTGCTCTTCCAAACAAGCCT
GGAGTCTACACAAGAGTGACTAAGTATCGAGACTGGATAGCCTCCAAGACTGGCCTCTAA

Translation (439 aa):
MMYAPVEFSQTAYPRIEYQRRQQQFWDPIRLALFTLAIVAIVGITIGIVTHFVVEDDKSFYYLASFQVTS
IKYRENYGIRSSREFIERSHQIERMMSRIFRRSSGVGRFIKSHVIKISPDEQGVNILIVLMFRYPSTDSA
ERIKKRIERTFYQSLKIKQLPLTISMPSFSLTPIDSKKMRNLLNSRCGIRMSSSNIPLPASSSTERIVQG
RETAMEGEWPWQASLQLIGAGHQCGATLISNTWLLTAAHCFWKNRDPTKWIVTFGTTITPPLVKRSVGKI
IIHEEYHRDTNENDIALAQLTTRVEFSNVVQRVCLPDSSMKLPPKTSVFVTGFGSIVDDGPTQNKLRQAR
VETIGSDVCNRKDVYDGLITPGMLCAGFMEGKIDACKGDSGGPLVYDNRDIWYIVGIVSWGQSCALPNKP
GVYTRVTKYRDWIASKTGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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