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Report for CCDS39922.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39922.1 Public Mus musculus 7 Zfp788 23 108 98 CCDS HistoryNCBI Gene:67607Re-query CCDS DB by CCDS ID:39922.1Re-query CCDS DB by GeneID:67607See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39922.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100275.9 ENSMUSP00000097847.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100275.9Link to Ensembl Protein Viewer:ENSMUSP00000097847.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000100275Re-query CCDS DB by Protein ID:ENSMUSP00000097847
Original member Current member EBI ENSMUST00000170770.1 ENSMUSP00000132848.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170770.1Link to Ensembl Protein Viewer:ENSMUSP00000132848.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170770Re-query CCDS DB by Protein ID:ENSMUSP00000132848
Original member Current member NCBI NM_001360680.1 NP_001347609.1 Accepted alive Link to Nucleotide Sequence:NM_001360680.1Link to Protein Sequence:NP_001347609.1Re-query CCDS DB by Nucleotide ID:NM_001360680Re-query CCDS DB by Protein ID:NP_001347609Link to BLAST:NP_001347609.1
Original member Current member NCBI NM_001360681.1 NP_001347610.1 Accepted alive Link to Nucleotide Sequence:NM_001360681.1Link to Protein Sequence:NP_001347610.1Re-query CCDS DB by Nucleotide ID:NM_001360681Re-query CCDS DB by Protein ID:NP_001347610Link to BLAST:NP_001347610.1
Original member Current member NCBI NM_001360683.1 NP_001347612.1 Accepted alive Link to Nucleotide Sequence:NM_001360683.1Link to Protein Sequence:NP_001347612.1Re-query CCDS DB by Nucleotide ID:NM_001360683Re-query CCDS DB by Protein ID:NP_001347612Link to BLAST:NP_001347612.1
Original member Current member NCBI NM_001360684.1 NP_001347613.1 Accepted alive Link to Nucleotide Sequence:NM_001360684.1Link to Protein Sequence:NP_001347613.1Re-query CCDS DB by Nucleotide ID:NM_001360684Re-query CCDS DB by Protein ID:NP_001347613Link to BLAST:NP_001347613.1
Original member Current member NCBI NM_023363.3 NP_075852.1 Accepted alive Link to Nucleotide Sequence:NM_023363.3Link to Protein Sequence:NP_075852.1Re-query CCDS DB by Nucleotide ID:NM_023363Re-query CCDS DB by Protein ID:NP_075852Link to BLAST:NP_075852.1

Chromosomal Locations for CCDS 39922.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 41647584 41647617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 41647819 41647879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 41648193 41650596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2499 nt):
ATGCTGGAAATCTACAATAACCTTGCTTGTGTCGGAAACAAATGGGAAGACCAAAGCATGGAAGATGAGC
ACACAAATCCTAGGAGAAGTCAAAGAATATGTAAGTTTGAGAGACTCTATGAGAGTACTGAAGGTGATCA
ATCTGGAGAAATCTTCACCAAGACACCAACTCTGACAAACATCTTCCCTGGTCTAAAATCTGAGCTTGAT
GAAAGTGGCGGGATGCAATATAAATGTGAACAGACTTGGAAAACAGACCTGAATTCTGTTACAAGTATTC
CAATATATACACAAAATCTCAGTATGAGTAGGTCTTATAACGTTTGTGCCACATCCTTTGGTTTTCCCAG
CTCATTTGGAAGATATCAAGAAACTCCTGTTGGAGAACAGCACTGTGAACAGAAGGTAAAAAACTGTCCT
TCAGCTAAATCATTTTACATCCATGAAATGAATGACAATGCAGACATCGATAATGAACACAAACCATTTG
GTAGAGCTCCGAGCTCTTTTGGTTCCTGTGAAAGTCGTGGAAGAATTAATACAAGGAAAAAGCCCTATGA
ATGTAGGCTGTGTAGTAAATCTTTCATGTATCCTTCTTTACTTCAAAAACATGAAATAACTCATTCCAAT
GAAAAACCCTACGGGTGCCTACAGTGTGGTAAAGCTTTCAGAAATTTCAGTTCTCTTCAAAAACATAAAA
TAGCTCATACTGAGGAAAAGCCTTATAAATGTCATTATTGTAATAAAGTGTTCATCTGTCAGGGATCACT
TCAGTCACATATAAGAGTTCACACTGGGGAAAAGCCTTACGAATGTAAACAGTGTGGGAAAGCCTTTAGA
GTTAACAGTTCCTTTTGGCGCCATAAAAAAGTTCATACTGGGGAAAAGCCCTATGAATGTAAACAATGTG
GTAAGTCCTTTATTTATCCTTCTCTACTTCAAACACATGAAAGAACTCACAGTGCAGAAAAGCCCTATAG
CTGTAAACAATGTGGTAAGGCCTTTAAATCTCACAGTTCCCTTCGAGTCCACGAAAGAAACCATACTGGG
AAAAAGCCCTATGAATGTAAACAATGTGGCAGGTCCTTTATTTATCCCTGCTTACTCCAGATTCATGAAC
GAACTCACAGTGGTGTGAAACCCTACGGATGTAAACAGTGTGGGAAAGCGTTCAGGCGCCTCAGTGACCT
TCGAGTCCATGAAAGAACTCATACCGGGGAAAAACCTTATGAATGTAAGCAGTGCGCTAAATCTTTTATT
AATCGGTATTTGCTTAAAATGCATCAAAAGTCTCATACTGGCGAGAAACCCTATAAGTGTAAGATTTGCA
GCAAAGCCTTCGTTTATCCCTCCTTACTTAAATTGCATGAGAGATCTCACACTGGGGAAAAGCCCTATCC
ATGTAAACAATGTGATAAAGCCTTCATTTTTCCCTCCTTACTTAAACTGCATGAAAGAACTCACACTGGG
GAAAAACCCTATGCCTGTAAACAGTGTGGTGAAGCCTTCAAAAGTTACAACTCCCTTCAGAGACATAAAA
GAATTCATACTGACGTAAAGGCTTATGTATGTAAACACTGTAGCAAAGCCTTCATATGCCAGAGGTCCCT
TCAGTTACATAATAGAACTCATACCGGAGAAAAACCATATAAATGTGAACAGTGTGGTAACTCCTTCAGA
TATCACAATTCCCTTCAAAGACATAAAATAATTCACACTGGGAAAAACCTCTATGAATGTAAACAGTGTG
ACAGGTCCTTCATTTATCCATATTTACTCCAAATACATGATAGAACGCACTCTGGGGGAAAACCATATGA
ATGTACACAGTGTGGTAAGTCCTATATTTATCCTTCTCTACTTCGAATACATGAAAGGACTCACAGTGCA
GAAAAACCCTATAGCTGTAAACAATGTGGTAAGGCCTTTAAATCTCACAGTTCCCTTCGGGTCCATGAAA
GAAACCATACTGGGGAAAAGCCCTATGAATGTAAACAATGTGGCAGGTCCTTTATTTATCCTTGCTTACT
CCAGACCCATGAAAGAATTCACAGTGGTGTGAAACCCTACGAATGTAAACAGTGTGGGAAAGCCTTTAGA
GGTCATAGTTCCTTTCGGGTCCATAAAAAACTTCACAGTGGGGAAAAGCCCTATGAATGCAAACAATGTG
GTAAGTGCTTCATTTATCCATCCTTACTTCGAATGCATGAAAGAACTCATAGTAGTGAAAAACCCTATGA
TTGTAAACAATGTGGTAAGGCCTTTAAATCTCGTAGTTCCCTCCGAGAACATGAAAGAAACCATATTGAG
GAAAAATCCTATCAGTGTCAACAGTGTGGTAAAATCTTCAGACGTTATAGTTCATTTCAAAACCATAAAC
AAATCCATGCTATACAAAAACTCAATGAATGCAAACAATGTGGTAAGATCTTCATTTATCCTTCTTTTCT
TCAGAGGCATGAAAGAACTCACATTTGTGAAAGAACCCTATGTATGTAA

Translation (832 aa):
MLEIYNNLACVGNKWEDQSMEDEHTNPRRSQRICKFERLYESTEGDQSGEIFTKTPTLTNIFPGLKSELD
ESGGMQYKCEQTWKTDLNSVTSIPIYTQNLSMSRSYNVCATSFGFPSSFGRYQETPVGEQHCEQKVKNCP
SAKSFYIHEMNDNADIDNEHKPFGRAPSSFGSCESRGRINTRKKPYECRLCSKSFMYPSLLQKHEITHSN
EKPYGCLQCGKAFRNFSSLQKHKIAHTEEKPYKCHYCNKVFICQGSLQSHIRVHTGEKPYECKQCGKAFR
VNSSFWRHKKVHTGEKPYECKQCGKSFIYPSLLQTHERTHSAEKPYSCKQCGKAFKSHSSLRVHERNHTG
KKPYECKQCGRSFIYPCLLQIHERTHSGVKPYGCKQCGKAFRRLSDLRVHERTHTGEKPYECKQCAKSFI
NRYLLKMHQKSHTGEKPYKCKICSKAFVYPSLLKLHERSHTGEKPYPCKQCDKAFIFPSLLKLHERTHTG
EKPYACKQCGEAFKSYNSLQRHKRIHTDVKAYVCKHCSKAFICQRSLQLHNRTHTGEKPYKCEQCGNSFR
YHNSLQRHKIIHTGKNLYECKQCDRSFIYPYLLQIHDRTHSGGKPYECTQCGKSYIYPSLLRIHERTHSA
EKPYSCKQCGKAFKSHSSLRVHERNHTGEKPYECKQCGRSFIYPCLLQTHERIHSGVKPYECKQCGKAFR
GHSSFRVHKKLHSGEKPYECKQCGKCFIYPSLLRMHERTHSSEKPYDCKQCGKAFKSRSSLREHERNHIE
EKSYQCQQCGKIFRRYSSFQNHKQIHAIQKLNECKQCGKIFIYPSFLQRHERTHICERTLCM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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