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Report for CCDS90160.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90160.1 Public Mus musculus 7 Chmp2a 23 108 98 CCDS HistoryNCBI Gene:68953Re-query CCDS DB by CCDS ID:90160.1Re-query CCDS DB by GeneID:68953See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90160.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000211626.1 ENSMUSP00000147393.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000211626.1Link to Ensembl Protein Viewer:ENSMUSP00000147393.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000211626Re-query CCDS DB by Protein ID:ENSMUSP00000147393
Original member Current member NCBI NM_001360733.1 NP_001347662.1 Accepted alive Link to Nucleotide Sequence:NM_001360733.1Link to Protein Sequence:NP_001347662.1Re-query CCDS DB by Nucleotide ID:NM_001360733Re-query CCDS DB by Protein ID:NP_001347662Link to BLAST:NP_001347662.1

Chromosomal Locations for CCDS 90160.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 13032075 13032202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13032289 13032350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13032435 13032565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13032792 13032821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13033829 13033996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (519 nt):
ATGGACCTGTTGTTTGGGCGCCGGAAGACGCCAGAGGAACTACTTCGGCAAAACCAGAGGGCCCTGAACC
GAGCCATGAGAGAACTGGACAGGGAACGACAGAAACTAGAAACCCAGGAAAAGAAAATCATTGCGGACAT
CAAAAAGATGGCAAAGCAAGGCCAGATGGATGCTGTTCGAATCATGGCAAAAGACCTGCTGAAATTACCC
CAGATCCAGAAGATCATGATGGAGTTTGAACGGCAGGCAGAGATCATGGACATGAAGGAAGAAATGATGA
ATGACGCAATTGATGATGCCATGGGTGATGAGGAAGATGAAGAGGAGAGTGATGCTGTTGTGTCCCAGGT
CCTGGATGAGCTGGGACTGAGCCTCACAGATGAGCTGTCAAACCTTCCCTCCACTGGAGGCTCACTCAGT
GTGGCAGCTGGTGGGAAGAAAGCAGAGGCCACAGCCTCAGCCCTGGCTGATGCTGATGCAGACCTGGAAG
AGAGGCTCAAGAACCTTCGCAGGGACTGA

Translation (172 aa):
MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMAKDLLKLP
QIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELSNLPSTGGSLS
VAAGGKKAEATASALADADADLEERLKNLRRD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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