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Report for CCDS39911.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39911.1 Public Mus musculus 7 Cep89 23 108 98 CCDS HistoryNCBI Gene:72140Re-query CCDS DB by CCDS ID:39911.1Re-query CCDS DB by GeneID:72140See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39911.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079414.11 ENSMUSP00000078383.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079414.11Link to Ensembl Protein Viewer:ENSMUSP00000078383.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000079414Re-query CCDS DB by Protein ID:ENSMUSP00000078383
Original member Current member NCBI NM_028120.3 NP_082396.1 Accepted alive Link to Nucleotide Sequence:NM_028120.3Link to Protein Sequence:NP_082396.1Re-query CCDS DB by Nucleotide ID:NM_028120Re-query CCDS DB by Protein ID:NP_082396Link to BLAST:NP_082396.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082396.1 791 Q9CZX2 791 100% 0 0

Chromosomal Locations for CCDS 39911.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 35397168 35397206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35397990 35398096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35403010 35403168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35405618 35405795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35409581 35409692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35414144 35414172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35416417 35416459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35417642 35417860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35418219 35418361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35420247 35420297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35420875 35420958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35423300 35423403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35424657 35424772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35427600 35427780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35428200 35428367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35429157 35429298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35432518 35432607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35435474 35435643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35438328 35438568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2376 nt):
ATGCTCCTCAGCTTCCGCAGGAACCGCCGGAGCCAGTTCAACCACATCATCCATGGCTTCCTCCCCGCAG
CCAGCATCGCTCCGAAGCCAGCGGTGCCACGCACACCCCCTCCTCGGAGCCCCAACCCTTCTCCAGAGAG
GCCCAGGTCTGCTCTGGCTGCAGCCATCCTGGCAACCACGTTGACTGGGCAGACAGTTGCCATTCCCCAG
CCTCGCCAGAGATCTCGGTCTGAGAGTGATGCCTCCGACATTGAAAAGGACAGCTTCATCAAGCCTTACG
CCACCACTTCCGAGCTGAGGCTGCGGCAAAGCTGGCAGAATGAGCCGAGAAGGACGTCATTACCATCCTT
TGAGATGTTAGGCTACGGGGAGGATGAAGATGCTGAAACACAGGTGTCAACCAGCTGCAGGGAGTCAGAG
TCCACCTGGAAGGATGTGGGAGATGGCAGAGATGCTACATACACTGTGCCTCACAGGGACCAGGTACTGC
CATCCCAAAAGCTGGTGAGAAAGGATGATGCTCCTCAACCAGACTGGCTTTCAGACTCCTCCTCCTCCTC
CTCCTCCTCAACACCACAGCACACTCAGCAGAAAGATGTTAAACACTCTGTTCTGAATCTAGAGGGTGAG
AAAGTCCGGTTGCATGAAAAGCCTCCTCCCTCCCCAGATGTAGCTGGTAGAATACATCAAAGATATACAG
AAATAACCAAAGAAAAGTTTGCGGAGTTAAAAGAAGAAACTGTGCATCTGTACTCTGCAAACCAAGCCCT
CAGCTGTGAACTGAGCGCTCTGAGACAGGCAATGAAGGACTTACAGCTGAAGCTCAAGTTGGTGGAAAAA
GACAACAGGAAGCTGAAGGAGACGGAAAAGGCTTCCTGTCAGGAAGGAGTCACACCTGAATTGCTTTGCC
TAAGGAAGCAAAGCCAAGACCTGGTGGATGAAAACGAGGGGCTGAAGATGATTGTCCATCGATTGAACGT
AGAACTCAGTCGCTACCAAACAAAATTCAGGCCTTTGTCTGAGGAAGAGAGTTCCCATATCCAAGGCCTC
CCATCCAAGGGCCCCACACCACCCTGGTTGGTGGATATAAAGTATCTCTCACCACTGTTGCTGGCTTATG
AAGACAGAATGAAAGAGAAGGACAAACTCAGCACCGCCCTGGAGGAGGAAATGAAAACCTTTAGGCTTCG
AGTTCAGGAAGTCGTGAAGGAAAACGAAGCCTTGCACCAAGAGTTAACTAAGAGAAGCCCCGTCACCGTA
GAGGAATGGAGGCAGCTTCAGACTCAAGCAGAGCTGGTTCTAGATGAGAACAAGCTGCTGATAGAGCAGT
TGGAGATTCAGCAAGCAAAAGCCAGGGACACCCACCAGGCGCACCTCCAGGACGTTTCTAAGCTGACTAA
ACAACTTGTGCTCCTGGAAGCAAAGACTCAGGGCCAGGAAAAGCAGCTCGTGGAAAGCACGGAGCAGCTG
GAGAGCTTGCAGGCCAAATGCACAGAGCTCAAGGCACAGCTGGATAGCAAGATCGCAGTGGACGTCCATA
CATCAATTGTCAATGAACTAAAAAGCCAGTTGCAAAAGGAAGAAGAGAAAGACAGTGCTGAGATGGAGGA
GCTGATGGCAAAGCTGACGGCCCTACAGGTGCAGAAGAAGAGCCTGCTTCTGGAGAAGAGCAGCTGGGCC
ACCAGGAACAGAGCGCTAGAGGCCGAGCTGGAGCGCACGCGCAAGGCCAACAGGCGATACCAAAAGAGAA
TTGATGTCCTCAGAAAGCAAGTAGAAAAGGCCATGGGGAAGGAGATGTCTGCTCACCAGTACCTGGCAAA
CCTGGTGGGCTTGGCAGAGACTGTCACCAAGGAACGAGACAGTCTTAAGTATTTGGCTCAGTGTTTAGAG
AGCGAGAAGCATGGGGTCCTCAACAAAATCCTGAAAGGCAACATTCGCCTGGGCAAGCTGGAGGAGAGGG
TAAAGGGGTACAAGAAGCAGGCAGCACTGAAGCTGGGGGATATCCATCACCGCCTGAAGGAACAGCAGGA
GGACTTTGCCGGCAAAGCAGCTCAGTACCAGAAGGAGGTGAAGCACCTACATCGGATGCTGCAGGAAAAG
CAGGAGGTCCTGGATGAGGCGCTGCAGCAGAAAAGAAATATGGAAGGTGAGCTTGAAATGGTCCTGGAGT
CCACTGCCAAGGAGAACAGGAGGATGCGGAGCCTTCTCCAGGCCACCCTGGAGAGAAGAAGCACACAGCA
CGTCACAGCTCCTCCGGACACTTGCTTGAGACGCTCCTCTCAGGGAGACCTACTGATTGGCCATGATTTC
AGCTATGGTGATGTGCAGCTTCTGGCTACCACCAACCGCCAGAGTCTGGGGGAATCTATGGCGTAG

Translation (791 aa):
MLLSFRRNRRSQFNHIIHGFLPAASIAPKPAVPRTPPPRSPNPSPERPRSALAAAILATTLTGQTVAIPQ
PRQRSRSESDASDIEKDSFIKPYATTSELRLRQSWQNEPRRTSLPSFEMLGYGEDEDAETQVSTSCRESE
STWKDVGDGRDATYTVPHRDQVLPSQKLVRKDDAPQPDWLSDSSSSSSSSTPQHTQQKDVKHSVLNLEGE
KVRLHEKPPPSPDVAGRIHQRYTEITKEKFAELKEETVHLYSANQALSCELSALRQAMKDLQLKLKLVEK
DNRKLKETEKASCQEGVTPELLCLRKQSQDLVDENEGLKMIVHRLNVELSRYQTKFRPLSEEESSHIQGL
PSKGPTPPWLVDIKYLSPLLLAYEDRMKEKDKLSTALEEEMKTFRLRVQEVVKENEALHQELTKRSPVTV
EEWRQLQTQAELVLDENKLLIEQLEIQQAKARDTHQAHLQDVSKLTKQLVLLEAKTQGQEKQLVESTEQL
ESLQAKCTELKAQLDSKIAVDVHTSIVNELKSQLQKEEEKDSAEMEELMAKLTALQVQKKSLLLEKSSWA
TRNRALEAELERTRKANRRYQKRIDVLRKQVEKAMGKEMSAHQYLANLVGLAETVTKERDSLKYLAQCLE
SEKHGVLNKILKGNIRLGKLEERVKGYKKQAALKLGDIHHRLKEQQEDFAGKAAQYQKEVKHLHRMLQEK
QEVLDEALQQKRNMEGELEMVLESTAKENRRMRSLLQATLERRSTQHVTAPPDTCLRRSSQGDLLIGHDF
SYGDVQLLATTNRQSLGESMA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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