NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS40215.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40215.1 Public Mus musculus 8 Arglu1 23 108 98 CCDS HistoryNCBI Gene:234023Re-query CCDS DB by CCDS ID:40215.1Re-query CCDS DB by GeneID:234023See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40215.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048545.9 ENSMUSP00000039493.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048545.9Link to Ensembl Protein Viewer:ENSMUSP00000039493.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000048545Re-query CCDS DB by Protein ID:ENSMUSP00000039493
Original member Current member NCBI NM_176849.3 NP_789819.2 Accepted alive Link to Nucleotide Sequence:NM_176849.3Link to Protein Sequence:NP_789819.2Re-query CCDS DB by Nucleotide ID:NM_176849Re-query CCDS DB by Protein ID:NP_789819Link to BLAST:NP_789819.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_789819.2 271 Q3UL36-1 271 100% 0 0

Chromosomal Locations for CCDS 40215.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 8667252 8667416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 8681384 8681467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 8683748 8683973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 8689977 8690317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (816 nt):
ATGGGCCGGTCGCGGAGCCGGAGCTCGTCCCGCTCTAAGCACACCAAGAGCTCCAAGCACAACAAGAAGC
GCAGCCGCTCGCGCTCGCGCTCGCGGGACAAGGAGCGGGTGCGGAAGCGCTCCAAGTCCCGGGAGAGCAA
ACGGAACCGGCGGCGGGAGTCGCGCTCCCGCTCGCGCTCCACCAACGCGGCGGCATCCCGGCGCGAGCGG
GAGCGCGCCTCGTCCCCGCCCGACCGCATCGACATCTTCGGGCGCACGGTGAGCAAGCGCAGCAGCCTGG
ACGAGAAGCAGAAGCGCGAGGAGGAGGAGAAGAAGGCGGAGTTCGAGCGACAGCGAAAAATTCGGCAGCA
GGAAATAGAAGAAAAACTCATTGAGGAAGAAACAGCACGAAGAGTGGAAGAATTGGTAGCAAAAAGGGTA
GAAGAAGAATTGGAGAAAAGGAAGGATGAAATTGAGCGAGAAGTTCTCCGAAGGGTTGAAGAAGCCAAAC
GCATCATGGAAAAGCAGTTGCTCGAAGAACTCGAGCGACAGAGACAAGCTGAGCTTGCAGCACAAAAAGC
CAGAGAGGAGGAAGAGAGAGCAAAGCGTGAGGAACTGGAGCGGATATTAGAAGAAAATAACCGGAAAATC
GCAGAAGCACAAGCCAAACTGGCTGAAGAACAGTTGAGAATTGTTGAAGAACAAAGAAAGATTCATGAGG
AAAGGATGAAACTAGAACAAGAACGACAGCGTCAGCAAAAAGAAGAACAAAAAATTATCCTGGGCAAGGG
GAAGTCCAGGCCAAAACTGTCCTTCTCACTAAAAACCCAGGATTGA

Translation (271 aa):
MGRSRSRSSSRSKHTKSSKHNKKRSRSRSRSRDKERVRKRSKSRESKRNRRRESRSRSRSTNAAASRRER
ERASSPPDRIDIFGRTVSKRSSLDEKQKREEEEKKAEFERQRKIRQQEIEEKLIEEETARRVEELVAKRV
EEELEKRKDEIEREVLRRVEEAKRIMEKQLLEELERQRQAELAAQKAREEEERAKREELERILEENNRKI
AEAQAKLAEEQLRIVEEQRKIHEERMKLEQERQRQQKEEQKIILGKGKSRPKLSFSLKTQD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH