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Report for CCDS45398.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45398.1 Public Homo sapiens 16 CLUAP1 24 110 108 CCDS HistoryNCBI Gene:23059Re-query CCDS DB by CCDS ID:45398.1Re-query CCDS DB by GeneID:23059See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45398.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000572600.5 ENSP00000460889.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000572600.5Link to Ensembl Protein Viewer:ENSP00000460889.1Re-query CCDS DB by Nucleotide ID:ENST00000572600Re-query CCDS DB by Protein ID:ENSP00000460889
Original member Current member NCBI NM_024793.3 NP_079069.1 Accepted alive Link to Nucleotide Sequence:NM_024793.3Link to Protein Sequence:NP_079069.1Re-query CCDS DB by Nucleotide ID:NM_024793Re-query CCDS DB by Protein ID:NP_079069Link to BLAST:NP_079069.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079069.1 247 Q96AJ1-2 247 100% 0 0

Chromosomal Locations for CCDS 45398.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 3515511 3515591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3519903 3520036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3523158 3523299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3526412 3526484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3530568 3530675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3532786 3532841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3536122 3536271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (744 nt):
ATGAGAACAGAAGCCATTGCCAGACCTCTGGAAATAAACGAGACTGAAAAAGTGATGAGAATTGCAATAA
AAGAGATTTTGACACAGGTTCAGAAGACTAAAGACCTGCTCAATAATGTGGCCTCTGATGAAGCTAATTT
AGAAGCCAAAATCGAAAAGAGAAAATTAGAACTGGAAAGAAATCGGAAGCGACTAGAGACTCTGCAGAGT
GTCAGGCCATGTTTTATGGATGAGTATGAGAAGACTGAGGAAGAATTACAAAAGCAGTATGACACTTATC
TGGAGAAATTTCAAAATCTGACTTATCTGGAACAACAGCTTGAAGACCATCATAGGATGGAGCAAGAAAG
GTTTGAGGAAGCTAAAAACACTCTCTGCCTGATACAGAACAAGCTCAAGGAGGAAGAGAAGCGCCTGCTC
AAGAGTGGAAGTAACGATGACTCGGACATAGACATCCAGGAGGACGATGAATCCGACAGTGAGTTGGAAG
AAAGGCGGCTGCCCAAGCCACAGACAGCCATGGAGATGCTCATGCAAGGAAGACCTGGCAAACGCATTGT
GGGCACGATGCAAGGTGGAGACTCCGATGACAATGAGGACTCGGAGGAGAGTGAAATTGACATGGAAGAT
GATGATGACGAGGATGACGATTTGGAAGACGAGAGCATTTCTCTCTCACCAACCAAGCCCAATCGAAGGG
TCCGGAAATCTGAACCCCTGGATGAGAGTGACAATGACTTCTGA

Translation (247 aa):
MRTEAIARPLEINETEKVMRIAIKEILTQVQKTKDLLNNVASDEANLEAKIEKRKLELERNRKRLETLQS
VRPCFMDEYEKTEEELQKQYDTYLEKFQNLTYLEQQLEDHHRMEQERFEEAKNTLCLIQNKLKEEEKRLL
KSGSNDDSDIDIQEDDESDSELEERRLPKPQTAMEMLMQGRPGKRIVGTMQGGDSDDNEDSEESEIDMED
DDDEDDDLEDESISLSPTKPNRRVRKSEPLDESDNDF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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