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Report for CCDS48768.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48768.1 Public Mus musculus 11 Lcp2 23 108 98 CCDS HistoryNCBI Gene:16822Re-query CCDS DB by CCDS ID:48768.1Re-query CCDS DB by GeneID:16822See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48768.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052413.11 ENSMUSP00000056621.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052413.11Link to Ensembl Protein Viewer:ENSMUSP00000056621.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000052413Re-query CCDS DB by Protein ID:ENSMUSP00000056621
Original member Current member NCBI NM_010696.4 NP_034826.2 Accepted alive Link to Nucleotide Sequence:NM_010696.4Link to Protein Sequence:NP_034826.2Re-query CCDS DB by Nucleotide ID:NM_010696Re-query CCDS DB by Protein ID:NP_034826Link to BLAST:NP_034826.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034826.2 533 Q60787 533 100% 0 0

Chromosomal Locations for CCDS 48768.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 34047354 34047431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34050897 34050959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34054306 34054352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34068414 34068479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34068938 34068969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34069868 34069905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34070970 34071168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34073497 34073594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34075052 34075118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34075216 34075299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34078244 34078269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34078385 34078404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34078508 34078615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34080190 34080220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34081720 34081732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34082394 34082523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34083420 34083469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34087208 34087302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34088030 34088107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34089525 34089680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34090565 34090687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1602 nt):
ATGGCCTTGAAGAATGTCCCGTTTCGCTCAGAGGTCCTAGCCTGGAACTCAGACAACCTCGCTGACTATT
TCAGGAAGCTGAACTACAGGGACTGTGAGAAGGCTGTGAAGAAATACCACATTGATGGTGCTCGGTTTTT
GAACCTGACAGAAAATGACATTCAGAAGTTCCCTAAGCTGAGGATGCCACTTCTCAGTAAGTTGAGTCAA
GATATCAACAAGAACGAAGAGAGAAGGAGCATTTTCACACGCAAACCCCAGATTCCACGGTTTCTTGAGG
AGACAGAAAGCCACGAAGAAGACGATGGTGGCTGGTCATCCTTTGAAGATGACTATGAAAGTCCCAATGA
TGATGATCCAGATGGGGAGGACGATGGTGACTATGAGTCCCCTAATGAGGAGGAACAGGCCCTGGTGGAC
GATGCTGCTGACTATGAGCCTCCACCCTCCAACAACGAGGAGGCTCTGCAGAGCTCCATCCTGCCCCCCA
ACTCTTTCCACAACACCAACTCCATGTACATCGACCGACCTCCCACTGGCAAGGTCTCCCAGCAGCCTCC
AGTGCCCCCACTGAGACCAAAACCTGCCCTCCCTCCCCTGCCAACAGGCAGGAATCACTCGCCACTGTCT
CCACCCCATCCCAACCACGAAGAGCCCAGCAGAAGTGGAAACAACAAGACAGCAAAGTTGCCTGCTCCAT
CAATAGACAGAAGCACAAAACCTCCCCTGGACCGCTCACTGGCCCCTCTTGACCGAGAGCCCTTCATACT
AGGAAAGAAACCACCATTTTCTGATAAGCCCTCAGCCCCATTGGGGAGGGAACATTTACCCAAGATACAA
AAGCCTCCTTTGCCACCAGCCATGGACAGACACGAAAGAAATGAAAGACTCGGACCCGTGACAACGAGGA
AGCCACCAGTTCCAAGGCATGGAAGGGGACCAGACAGAAGAGAGAATGATGAAGATGATGTGCATCAGAG
ACCTTTGCCACAGCCGTCACTACCTTCCATGAGCTCCAACACATTCCCTTCGAGATCTGTCCAGCCCAGC
TCCAAGAACACATTCCCATTGGCCCACATGCCGGGAGCCTTCTCAGAAAGCAACATTGGCTTTCAGCAGA
GTGCCTCCCTGCCGCCATACTTCTCTCAAGGTCCAGGCAACAGGCCACCTCTCAGAAGTGAAGGCAGAAA
CTTACCCTTGCCGGTTCCAAACAGGCCTCAGCCTCCATCTCCTGGGGAAGAAGAGACACCCTTAGATGAA
GAGTGGTATGTCTCTTATATCACCCGACCAGAGGCAGAAGCTGCTCTGAGGAAGATAAACCAGGATGGCA
CCTTCCTGGTTAGAGACAGCTCTAAGAAGACAGCGAACAATCCGTATGTCCTCATGGTGCTGTACAAAGA
CAAAGTTTACAACATCCAAATCCGCTACCAGGAGGAAAGTCAAGTCTACTTGTTGGGCACTGGACTTCGA
GGAAAAGAGGACTTCCTGTCTGTATCAGATATTATTGACTACTTCAGGAAAATGCCGCTGTTGCTCATTG
ATGGAAAGAATCGAGGGTCCAGATACCAGTGCACACTAACACACGCTGCAGGCTGTCTGTAG

Translation (533 aa):
MALKNVPFRSEVLAWNSDNLADYFRKLNYRDCEKAVKKYHIDGARFLNLTENDIQKFPKLRMPLLSKLSQ
DINKNEERRSIFTRKPQIPRFLEETESHEEDDGGWSSFEDDYESPNDDDPDGEDDGDYESPNEEEQALVD
DAADYEPPPSNNEEALQSSILPPNSFHNTNSMYIDRPPTGKVSQQPPVPPLRPKPALPPLPTGRNHSPLS
PPHPNHEEPSRSGNNKTAKLPAPSIDRSTKPPLDRSLAPLDREPFILGKKPPFSDKPSAPLGREHLPKIQ
KPPLPPAMDRHERNERLGPVTTRKPPVPRHGRGPDRRENDEDDVHQRPLPQPSLPSMSSNTFPSRSVQPS
SKNTFPLAHMPGAFSESNIGFQQSASLPPYFSQGPGNRPPLRSEGRNLPLPVPNRPQPPSPGEEETPLDE
EWYVSYITRPEAEAALRKINQDGTFLVRDSSKKTANNPYVLMVLYKDKVYNIQIRYQEESQVYLLGTGLR
GKEDFLSVSDIIDYFRKMPLLLIDGKNRGSRYQCTLTHAAGCL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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