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Report for CCDS34488.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34488.1 Public Homo sapiens 6 IRAK1BP1 24 110 108 CCDS HistoryNCBI Gene:134728Re-query CCDS DB by CCDS ID:34488.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34488.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369940.7 ENSP00000358956.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369940.7Link to Ensembl Protein Viewer:ENSP00000358956.1Re-query CCDS DB by Nucleotide ID:ENST00000369940Re-query CCDS DB by Protein ID:ENSP00000358956
Original member Current member NCBI NM_001010844.4 NP_001010844.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001010844.4Link to Protein Sequence:NP_001010844.1Re-query CCDS DB by Nucleotide ID:NM_001010844Re-query CCDS DB by Protein ID:NP_001010844Link to BLAST:NP_001010844.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001010844.1 260 Q5VVH5 260 100% 0 0

Chromosomal Locations for CCDS 34488.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 78867577 78867891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 78885378 78885443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 78897829 78897959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 78898064 78898334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (783 nt):
ATGTCTCTGCAAAAGACCCCTCCGACCCGAGTGTTCGTGGAACTGGTTCCCTGGGCTGACCGGAGCCGGG
AGAACAACCTGGCCTCAGGGAGAGAGACGCTACCGGGCTTACGCCACCCCCTCTCCTCAACACAAGCCCA
AACTGCTACCCGCGAGGTGCAAGTAAGCGGCACCTCAGAAGTGTCTGCGGGCCCTGACCGGGCGCAGGTG
GTGGTGCGAGTGAGCAGCACCAAGGAGGCGGCAGCCGAGGCCAAAAAGAGCGTTTGTCGCCGTCTAGATT
ACATCACGCAGAGCCTCCAGCAGCAGGGCGTGCAGGCAGAAAATATAACTGTGACAAAGGATTTTAGGAG
AGTGGAAAATGCTTATCACATGGAAGCAGAGGTCTGCATTACATTTACTGAATTTGGAAAAATGCAAAAT
ATTTGTAACTTTCTTGTTGAAAAGCTAGATAGCTCTGTTGTCATCAGCCCACCCCAGTTCTATCATACTC
CAGGTTCTGTTGAGAATCTTCGACGGCAAGCCTGTCTTGTTGCTGTTGAGAATGCGTGGCGCAAAGCTCA
AGAAGTCTGTAACCTTGTTGGCCAAACCTTAGGAAAACCTTTACTAATCAAAGAAGAAGAAACAAAAGAA
TGGGAAGGCCAAATAGATGATCACCAGTCATCCAGACTCTCAAGTTCATTAACTGTACAACAAAAAATCA
AAAGTGCAACAATACATGCTGCTTCAAAAGTATTTATAACTTTTGAGGTAAAGGGAAAAGAGAAGAGAAA
AAAGCACCTTTGA

Translation (260 aa):
MSLQKTPPTRVFVELVPWADRSRENNLASGRETLPGLRHPLSSTQAQTATREVQVSGTSEVSAGPDRAQV
VVRVSSTKEAAAEAKKSVCRRLDYITQSLQQQGVQAENITVTKDFRRVENAYHMEAEVCITFTEFGKMQN
ICNFLVEKLDSSVVISPPQFYHTPGSVENLRRQACLVAVENAWRKAQEVCNLVGQTLGKPLLIKEEETKE
WEGQIDDHQSSRLSSSLTVQQKIKSATIHAASKVFITFEVKGKEKRKKHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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