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Report for CCDS23104.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23104.1 Public Mus musculus 9 Dpagt1 23 108 98 CCDS HistoryNCBI Gene:13478Re-query CCDS DB by CCDS ID:23104.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23104.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054708.4 ENSMUSP00000056282.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054708.4Link to Ensembl Protein Viewer:ENSMUSP00000056282.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000054708Re-query CCDS DB by Protein ID:ENSMUSP00000056282
Original member Current member NCBI NM_007875.3 NP_031901.2 Accepted alive Link to Nucleotide Sequence:NM_007875.3Link to Protein Sequence:NP_031901.2Re-query CCDS DB by Nucleotide ID:NM_007875Re-query CCDS DB by Protein ID:NP_031901Link to BLAST:NP_031901.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031901.2 410 P42867 410 100% 0 0

Chromosomal Locations for CCDS 23104.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 44327039 44327205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44327552 44327672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44327953 44328166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44328991 44329137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44331118 44331202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44331904 44332092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44332563 44332650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44332816 44332971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44333057 44333122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1233 nt):
ATGTGGGCCTTCCCGGAGTTGCCCCTGCCGCTGCCGCTGCTGGTGAATTTGATCGGCTCGCTGTTGGGAT
TCGTGGCTACAGTCACCCTCATCCCTGCCTTCCGTAGCCACTTTATCGCCGCGCGCCTCTGTGGCCAGGA
CCTCAACAAGCTCAGCCAGCAGCAGATCCCAGAGTCCCAGGGAGTGATCAGCGGTGCTGTTTTCCTTATC
ATCCTCTTCTGCTTCATCCCTTTCCCCTTCCTGAACTGCTTCGTGGAGGAGCAGTGTAAGGCATTCCCCC
ACCATGAATTTGTGGCCCTAATAGGTGCCCTCCTTGCCATCTGCTGCATGATCTTCCTGGGGTTTGCTGA
TGATGTCCTCAATCTCCGCTGGCGCCACAAGCTGCTGCTGCCCACAGCTGCCTCACTACCTCTCCTCATG
GTCTACTTCACAAACTTTGGCAATACAACCATCGTGGTGCCCAAGCCCTTCCGCTGGATTCTGGGCCTGC
ATTTGGACTTGGGGATCCTGTACTACGTCTACATGGGGCTGCTTGCAGTGTTCTGTACCAATGCCATCAA
CATCCTGGCGGGCATTAATGGCCTAGAGGCCGGTCAGTCACTAGTCATCTCTGCTTCTATCATTGTCTTC
AACCTGGTGGAACTGGAAGGTGATTATCGAGATGATCATATCTTTTCCCTTTACTTCATGATACCATTTT
TCTTTACCACCTTGGGACTGCTTTACCACAACTGGTACCCGTCCCGCGTGTTTGTGGGAGACACCTTCTG
TTACTTTGCGGGCATGACTTTTGCCGTGGTGGGGATCTTGGGACACTTCAGCAAGACCATGCTGCTCTTC
TTTATGCCACAAGTATTCAATTTCCTCTACTCACTGCCTCAGCTCTTCCATATCATCCCCTGCCCTCGAC
ACCGGATGCCCAGACTCAACGCAAAGACAGGCAAACTGGAAATGAGCTATTCCAAGTTCAAGACCAAGAA
CCTCTCTTTCCTGGGCACCTTTATTTTAAAGGTAGCAGAGAACCTCCGGTTAGTGACAGTTCACCAAGGT
GAGAGTGAGGACGGTGCCTTCACTGAGTGTAACAACATGACCCTCATCAACTTGCTACTTAAAGTCTTTG
GGCCTATACATGAGAGAAACCTCACCCTGCTCCTGCTGCTCCTGCAGGTCCTAAGCAGCGCCGCCACCTT
CTCCATTCGTTACCAACTCGTCCGACTCTTCTATGATGTCTGA

Translation (410 aa):
MWAFPELPLPLPLLVNLIGSLLGFVATVTLIPAFRSHFIAARLCGQDLNKLSQQQIPESQGVISGAVFLI
ILFCFIPFPFLNCFVEEQCKAFPHHEFVALIGALLAICCMIFLGFADDVLNLRWRHKLLLPTAASLPLLM
VYFTNFGNTTIVVPKPFRWILGLHLDLGILYYVYMGLLAVFCTNAINILAGINGLEAGQSLVISASIIVF
NLVELEGDYRDDHIFSLYFMIPFFFTTLGLLYHNWYPSRVFVGDTFCYFAGMTFAVVGILGHFSKTMLLF
FMPQVFNFLYSLPQLFHIIPCPRHRMPRLNAKTGKLEMSYSKFKTKNLSFLGTFILKVAENLRLVTVHQG
ESEDGAFTECNNMTLINLLLKVFGPIHERNLTLLLLLLQVLSSAATFSIRYQLVRLFYDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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